Strain Fitness in Pseudomonas putida KT2440 around PP_2636

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,015,125	+		PP_2635	0.63	-0.5
3,015,125	+		PP_2635	0.63	-0.5
3,015,125	+		PP_2635	0.63	+0.5
3,015,125	+		PP_2635	0.63	+0.3
3,015,125	+		PP_2635	0.63	-0.3
3,015,125	+		PP_2635	0.63	+0.4
3,015,126	-				-1.1
3,015,126	-		PP_2635	0.63	+0.5
3,015,134	+		PP_2635	0.64	-0.3
3,015,135	-		PP_2635	0.64	-1.7
3,015,161	+		PP_2635	0.65	-0.6
3,015,219	-		PP_2635	0.67	-0.5
3,015,266	+		PP_2635	0.69	-0.5
3,015,267	-		PP_2635	0.69	-0.9
3,015,383	+		PP_2635	0.73	-0.1
3,015,383	+		PP_2635	0.73	+0.6
3,015,383	+		PP_2635	0.73	+0.8
3,015,383	+		PP_2635	0.73	+0.5
3,015,384	-		PP_2635	0.73	+0.3
3,015,384	-		PP_2635	0.73	+0.1
3,015,497	+				+0.5
3,015,497	+		PP_2635	0.78	-0.2
3,015,498	-		PP_2635	0.78	+0.5
3,015,666	+		PP_2635	0.84	+0.5
3,015,666	+		PP_2635	0.84	-1.5
3,015,703	-		PP_2635	0.86	+0.9
3,015,814	+		PP_2635	0.90	+0.0
3,016,019	+				+0.1
3,016,020	-				-1.4
3,016,088	-				-0.7
3,016,161	-				+0.0
3,016,268	+				+1.2
3,016,285	-				+0.4
3,016,342	+		PP_2636	0.12	-1.2
3,016,343	-		PP_2636	0.12	+0.4
3,016,391	-		PP_2636	0.14	-0.2
3,016,415	+		PP_2636	0.15	-0.1
3,016,451	+		PP_2636	0.16	-1.1
3,016,452	-		PP_2636	0.16	+0.0
3,016,502	+		PP_2636	0.19	-0.6
3,016,502	+		PP_2636	0.19	-0.2
3,016,527	+		PP_2636	0.20	+0.4
3,016,528	-		PP_2636	0.20	+0.3
3,016,528	-		PP_2636	0.20	-0.4
3,016,592	+		PP_2636	0.23	-3.3
3,016,592	+		PP_2636	0.23	+0.1
3,016,679	+		PP_2636	0.26	+0.2
3,016,679	+		PP_2636	0.26	-1.1
3,016,679	+		PP_2636	0.26	+0.0
3,016,680	-		PP_2636	0.26	-0.3
3,016,680	-		PP_2636	0.26	-1.2
3,016,680	-		PP_2636	0.26	+0.1
3,016,750	+		PP_2636	0.29	-0.5
3,016,750	+		PP_2636	0.29	-0.5
3,016,798	+		PP_2636	0.32	-0.5
3,017,086	+		PP_2636	0.44	-0.9
3,017,241	+		PP_2636	0.51	+0.0
3,017,242	-		PP_2636	0.51	+3.6
3,017,268	+		PP_2636	0.52	-0.6
3,017,324	-		PP_2636	0.55	+0.2
3,017,324	-		PP_2636	0.55	+0.2
3,017,591	-		PP_2636	0.66	-0.5
3,017,599	+		PP_2636	0.67	-2.0
3,017,599	+		PP_2636	0.67	-0.0
3,017,599	+		PP_2636	0.67	+0.4
3,017,599	+		PP_2636	0.67	-0.4
3,017,600	-		PP_2636	0.67	-0.2
3,017,600	-		PP_2636	0.67	-0.6
3,017,600	-		PP_2636	0.67	+0.8
3,017,600	-		PP_2636	0.67	-1.3
3,017,600	-		PP_2636	0.67	-0.4
3,017,600	-		PP_2636	0.67	-0.2
3,018,086	-		PP_2636	0.88	+0.0
3,018,086	-		PP_2636	0.88	-1.9
3,018,116	+		PP_2636	0.89	-0.7
3,018,117	-		PP_2636	0.89	-0.1
3,018,197	-				+0.4
3,018,197	-				+0.4
3,018,537	+		PP_2637	0.16	-0.5
3,018,537	+		PP_2637	0.16	+0.4
3,018,538	-		PP_2637	0.16	-1.7
3,018,559	+		PP_2637	0.18	+0.3
3,018,906	+		PP_2637	0.49	-0.1
3,018,907	-		PP_2637	0.49	-0.2
3,019,086	+		PP_2637	0.65	-2.6
3,019,086	+		PP_2637	0.65	-0.3
3,019,087	-		PP_2637	0.65	-0.1
3,019,087	-		PP_2637	0.65	+0.8
3,019,087	-		PP_2637	0.65	-0.6
3,019,104	+		PP_2637	0.67	-1.5
3,019,105	-				+0.1
3,019,164	+		PP_2637	0.72	-0.1