Strain Fitness in Pseudomonas putida KT2440 around PP_4767

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
5,427,176	-		PP_4766	0.30	-0.4
5,427,484	+		PP_4766	0.54	-1.6
5,427,586	-		PP_4766	0.61	-0.7
5,427,763	+		PP_4766	0.74	-1.2
5,427,777	+		PP_4766	0.76	+0.9
5,427,777	+		PP_4766	0.76	-2.0
5,427,786	+		PP_4766	0.76	-1.0
5,427,786	+		PP_4766	0.76	+0.9
5,427,786	+		PP_4766	0.76	+1.1
5,427,787	-		PP_4766	0.76	-0.0
5,427,790	+		PP_4766	0.77	+0.0
5,427,790	+		PP_4766	0.77	-1.4
5,427,860	+		PP_4766	0.82	-0.6
5,428,042	-				-1.3
5,428,042	-				+0.8
5,428,108	+				-0.8
5,428,108	+				-0.8
5,428,109	-				-1.5
5,428,109	-				+0.7
5,428,109	-				-0.1
5,428,159	+				+0.7
5,428,159	+				-0.4
5,428,188	+				-0.8
5,428,188	+				-0.6
5,428,305	+		PP_4767	0.16	+0.8
5,428,333	+		PP_4767	0.19	-1.0
5,428,334	-		PP_4767	0.19	-0.9
5,428,339	+		PP_4767	0.20	-1.2
5,428,339	+		PP_4767	0.20	+0.7
5,428,340	-		PP_4767	0.20	-1.2
5,428,340	-		PP_4767	0.20	+0.4
5,428,378	+		PP_4767	0.24	-1.1
5,428,378	+		PP_4767	0.24	-1.0
5,428,378	+		PP_4767	0.24	+0.3
5,428,378	+		PP_4767	0.24	-0.4
5,428,378	+		PP_4767	0.24	+0.0
5,428,378	+		PP_4767	0.24	+0.9
5,428,378	+		PP_4767	0.24	-0.0
5,428,379	-		PP_4767	0.24	-1.1
5,428,379	-		PP_4767	0.24	-1.1
5,428,379	-		PP_4767	0.24	-1.1
5,428,384	+		PP_4767	0.25	-0.2
5,428,384	+		PP_4767	0.25	-3.0
5,428,384	+		PP_4767	0.25	+0.3
5,428,385	-		PP_4767	0.25	-0.8
5,428,385	-		PP_4767	0.25	+1.3
5,428,884	-		PP_4767	0.79	-2.3
5,428,884	-		PP_4767	0.79	-1.3
5,428,918	+		PP_4767	0.83	-1.8
5,428,919	-		PP_4767	0.83	-2.0
5,429,002	+				-0.2
5,429,003	-				-0.5
5,429,003	-				-0.2
5,429,003	-				+0.9
5,429,006	+				+1.5
5,429,006	+				+1.0
5,429,006	+				-0.0
5,429,006	+				+1.0
5,429,006	+				-0.0
5,429,006	+				+0.5
5,429,006	+				+1.4
5,429,007	-				-0.7
5,429,007	-				-0.5
5,429,023	+				-1.3
5,429,024	-				-0.5
5,429,024	-				+0.9
5,429,117	-				-0.5
5,429,144	-				+1.1
5,429,231	+				+0.7
5,429,232	-				-0.4
5,429,330	-		PP_4768	0.18	+1.1
5,429,330	-		PP_4768	0.18	-0.1
5,429,330	-		PP_4768	0.18	+2.0
5,429,342	+		PP_4768	0.20	-0.8
5,429,342	+		PP_4768	0.20	-0.3
5,429,531	+		PP_4768	0.51	-1.8
5,429,532	-		PP_4768	0.51	+0.3
5,429,790	+				-0.1
5,429,791	-				-0.4
5,429,820	+				-0.4
5,429,820	+				-1.0
5,429,820	+				+0.1
5,429,821	-				-0.5
5,429,821	-				+0.8
5,429,840	+				+0.9
5,429,876	+				-0.1
5,429,877	-				+0.9
5,429,927	+		PP_4769	0.18	+1.5
5,429,927	+				+1.2
5,429,928	-		PP_4769	0.19	-2.1
5,429,928	-		PP_4769	0.19	+0.4
5,430,048	+		PP_4769	0.44	-0.1