Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0633 and PP_0634 are separated by 216 nucleotides PP_0634 and PP_t12 are separated by 71 nucleotides PP_t12 and PP_0635 are separated by 499 nucleotides
PP_0633: PP_0633 - Type 4 fimbrial assembly protein PilC, at 739,418 to 740,626
_0633
PP_0634: PP_0634 - Fimbrial protein, at 740,843 to 741,253
_0634
PP_t12: PP_t12 - tRNA-Thr, at 741,325 to 741,400
_t12
PP_0635: PP_0635 - Group II intron-encoding maturase, at 741,900 to 743,321
_0635
Position (kb) 741
742 Strain fitness (log2 ratio) -1
0
1 at 740.536 kb on - strand at 740.536 kb on - strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.604 kb on + strand at 740.710 kb on + strand at 740.711 kb on - strand at 740.715 kb on + strand at 740.715 kb on + strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.716 kb on - strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.836 kb on + strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.837 kb on - strand at 740.861 kb on - strand at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.931 kb on - strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.266 kb on - strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.310 kb on + strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.332 kb on + strand at 741.360 kb on + strand, within PP_t12 at 741.415 kb on - strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 740,536 - +0.1 740,536 - +0.1 740,604 + -1.3 740,604 + -0.7 740,604 + +0.7 740,710 + +0.6 740,711 - +0.3 740,715 + -1.1 740,715 + +0.0 740,716 - -0.5 740,716 - +0.1 740,716 - +1.6 740,836 + -0.0 740,836 + -0.7 740,836 + -0.8 740,836 + -0.7 740,836 + +0.7 740,836 + -0.7 740,837 - +0.4 740,837 - -1.5 740,837 - +0.6 740,861 - +0.2 740,930 + PP_0634 0.21 +0.8 740,930 + PP_0634 0.21 -0.1 740,930 + PP_0634 0.21 -0.0 740,931 - PP_0634 0.21 +0.2 741,030 + PP_0634 0.45 -0.5 741,030 + PP_0634 0.45 -1.5 741,030 + PP_0634 0.45 +0.7 741,031 - PP_0634 0.46 -0.3 741,031 - PP_0634 0.46 +1.4 741,040 - PP_0634 0.48 -0.2 741,040 - PP_0634 0.48 +1.7 741,266 - -1.6 741,266 - -0.3 741,266 - +0.2 741,310 + +0.4 741,311 - +0.1 741,311 - -0.0 741,311 - +1.3 741,332 + -1.0 741,360 + PP_t12 0.46 -1.0 741,415 - -0.6 741,443 + -1.0 741,443 + +0.3 741,443 + +0.1 741,443 + +0.2 741,443 + -1.0 741,444 - -0.1 741,444 - +0.3 741,444 - +0.5 741,444 - +0.6 741,500 - -0.1
Or see this region's nucleotide sequence