Strain Fitness in Pseudomonas putida KT2440 around PP_3504

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,974,137	+		PP_3503	0.75	+0.1
3,974,137	+		PP_3503	0.75	+0.4
3,974,138	-		PP_3503	0.75	+1.1
3,974,324	-		PP_3503	0.89	-0.2
3,974,364	+				+1.3
3,974,364	+				+0.4
3,974,365	-				+0.6
3,974,365	-				+0.4
3,974,405	-				+0.3
3,974,541	+				+0.3
3,974,541	+				-0.2
3,974,694	+				-0.5
3,974,694	+				+0.1
3,974,717	+				-0.4
3,974,717	+				-0.9
3,974,718	-				-0.8
3,974,723	+				-0.4
3,974,799	-				-0.4
3,974,799	-				-0.6
3,974,884	-		PP_3504	0.27	-0.3
3,974,905	+		PP_3504	0.34	-0.2
3,974,905	+		PP_3504	0.34	-1.5
3,974,981	+		PP_3504	0.63	-0.6
3,974,981	+		PP_3504	0.63	-1.1
3,974,981	+		PP_3504	0.63	-0.6
3,974,982	-		PP_3504	0.63	-0.4
3,974,982	-		PP_3504	0.63	-0.4
3,974,982	-		PP_3504	0.63	-0.8
3,975,077	+				+0.2
3,975,078	-				-1.0
3,975,078	-				-3.2
3,975,121	+				-0.8
3,975,121	+				-0.4
3,975,121	+				+1.2
3,975,220	+				-0.3
3,975,221	-				-0.4
3,975,221	-				-0.8
3,975,324	-		PP_3505	0.23	+0.1
3,975,403	-		PP_3505	0.37	-0.7
3,975,568	+		PP_3505	0.65	-0.5
3,976,021	+		PP_3506	0.16	-1.4
3,976,078	+		PP_3506	0.22	+1.9
3,976,078	+		PP_3506	0.22	-0.3