Strain Fitness in Pseudomonas putida KT2440 around PP_3012

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,402,140	-				+1.5
3,402,213	+		PP_3010	0.28	-0.2
3,402,214	-		PP_3010	0.29	-0.6
3,402,215	+		PP_3010	0.29	-0.3
3,402,216	-		PP_3010	0.29	+0.2
3,402,216	-		PP_3010	0.29	-0.5
3,402,216	-		PP_3010	0.29	+0.4
3,402,216	-		PP_3010	0.29	-0.3
3,402,250	-		PP_3010	0.38	+0.3
3,402,274	+		PP_3010	0.45	+0.6
3,402,275	-		PP_3010	0.45	+0.1
3,402,295	-		PP_3010	0.51	+0.3
3,402,312	-		PP_3010	0.55	-1.1
3,402,367	+		PP_3010	0.70	-2.0
3,402,367	+		PP_3010	0.70	+0.8
3,402,367	+		PP_3010	0.70	-0.7
3,402,367	+		PP_3010	0.70	-0.4
3,402,368	-		PP_3010	0.70	+0.4
3,402,408	+		PP_3010	0.81	-1.2
3,402,409	-		PP_3010	0.82	+0.4
3,402,409	-		PP_3010	0.82	+0.3
3,402,427	-		PP_3010	0.86	-0.4
3,402,474	+				+0.1
3,402,474	+				-0.4
3,402,497	+				+0.0
3,402,622	+				+0.3
3,402,632	-				+0.5
3,402,668	+		PP_3011	0.11	-0.6
3,402,668	+		PP_3011	0.11	-2.0
3,402,669	-		PP_3011	0.11	-0.3
3,402,669	-		PP_3011	0.11	+1.0
3,402,669	-		PP_3011	0.11	-0.1
3,402,736	+		PP_3011	0.30	+0.5
3,402,736	+		PP_3011	0.30	+0.3
3,402,736	+		PP_3011	0.30	-0.1
3,402,737	-		PP_3011	0.30	+0.1
3,402,739	+		PP_3011	0.31	+0.9
3,402,739	+		PP_3011	0.31	+1.2
3,402,785	+		PP_3011	0.44	+0.3
3,402,786	-		PP_3011	0.44	-0.8
3,402,786	-		PP_3011	0.44	-0.2
3,402,806	+		PP_3011	0.49	-0.6
3,402,806	+		PP_3011	0.49	-1.0
3,402,807	-		PP_3011	0.50	-0.5
3,402,816	-		PP_3011	0.52	-0.5
3,402,841	+		PP_3011	0.59	+0.5
3,402,841	+		PP_3011	0.59	+0.5
3,402,842	-		PP_3011	0.59	-1.0
3,402,842	-		PP_3011	0.59	-0.5
3,402,904	+		PP_3011	0.77	+0.7
3,402,904	+		PP_3011	0.77	-0.5
3,402,904	+		PP_3011	0.77	+0.5
3,402,905	-		PP_3011	0.77	-0.7
3,402,905	-		PP_3011	0.77	+0.9
3,402,905	-		PP_3011	0.77	+2.2
3,402,905	-		PP_3011	0.77	-0.9
3,402,905	-		PP_3011	0.77	-0.0
3,402,919	+		PP_3011	0.81	+0.7
3,402,919	+		PP_3011	0.81	-0.1
3,402,934	+				+0.3
3,402,934	+		PP_3011	0.85	-0.2
3,402,934	+		PP_3011	0.85	+0.2
3,402,934	+		PP_3011	0.85	+0.1
3,402,934	+		PP_3011	0.85	-0.9
3,402,935	-		PP_3011	0.85	-0.3
3,402,935	-		PP_3011	0.85	+0.0
3,402,935	-		PP_3011	0.85	+0.6
3,403,026	-				+0.2
3,403,089	+		PP_3012	0.37	+0.4
3,403,089	+		PP_3012	0.37	-0.8
3,403,089	+		PP_3012	0.37	-2.0
3,403,089	+		PP_3012	0.37	-1.3
3,403,090	-		PP_3012	0.38	-0.7
3,403,090	-		PP_3012	0.38	+0.7
3,403,132	+		PP_3012	0.71	+0.7
3,403,132	+		PP_3012	0.71	-0.5
3,403,133	-		PP_3012	0.71	-0.9
3,403,133	-		PP_3012	0.71	-0.9
3,403,133	-		PP_3012	0.71	-1.2
3,403,229	-				-1.1
3,403,309	+		PP_3013	0.38	+0.1
3,403,309	+		PP_3013	0.38	+0.4
3,403,309	+		PP_3013	0.38	-1.1
3,403,310	-		PP_3013	0.38	+0.6
3,403,332	+		PP_3013	0.47	-0.3
3,403,333	-		PP_3013	0.48	+0.2
3,403,333	-		PP_3013	0.48	-1.1
3,403,354	-				+1.4
3,403,380	-		PP_3013	0.66	-0.4
3,403,484	+				+0.3
3,403,485	-				-0.4
3,403,496	+				+1.1
3,403,496	+				-0.6
3,403,559	+				+0.6
3,403,591	+				+0.6
3,403,640	-		PP_3014	0.16	+0.5
3,403,725	-		PP_3014	0.39	+0.7
3,403,880	+		PP_3014	0.82	-0.2
3,403,880	+		PP_3014	0.82	+0.1
3,403,881	-		PP_3014	0.83	+0.8
3,403,912	-				-1.9
3,403,912	-				-0.3
3,403,912	-				+0.1
3,403,986	+				+0.2
3,404,049	+		PP_5549	0.31	-0.6
3,404,050	-		PP_5549	0.31	+0.3
3,404,085	+		PP_5549	0.48	+0.3
3,404,085	+		PP_5549	0.48	+0.9
3,404,085	+		PP_5549	0.48	+0.2
3,404,118	+		PP_5549	0.64	-0.1
3,404,119	-		PP_5549	0.65	-0.0
3,404,119	-		PP_5549	0.65	-0.8
3,404,121	+		PP_5549	0.66	+0.7