Strain Fitness in Pseudomonas putida KT2440 around PP_2640

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,023,440	+		PP_2639	0.14	-1.2
3,023,557	-		PP_2639	0.27	+0.3
3,023,637	+		PP_2639	0.37	-0.0
3,023,637	+		PP_2639	0.37	-1.6
3,023,637	+		PP_2639	0.37	-0.9
3,023,637	+		PP_2639	0.37	+0.8
3,023,637	+		PP_2639	0.37	-0.9
3,023,637	+		PP_2639	0.37	-1.0
3,023,638	-		PP_2639	0.37	-0.1
3,023,638	-		PP_2639	0.37	-0.2
3,023,638	-		PP_2639	0.37	+0.5
3,023,638	-		PP_2639	0.37	+1.7
3,023,638	-		PP_2639	0.37	-0.2
3,023,638	-		PP_2639	0.37	-1.1
3,023,638	-		PP_2639	0.37	-0.9
3,023,639	+		PP_2639	0.37	-1.2
3,023,639	+		PP_2639	0.37	-1.0
3,023,639	+		PP_2639	0.37	-0.3
3,023,716	-		PP_2639	0.46	+0.2
3,023,741	-		PP_2639	0.49	+1.0
3,023,956	+		PP_2639	0.73	+0.1
3,023,956	+		PP_2639	0.73	+0.8
3,023,956	+		PP_2639	0.73	+1.7
3,023,956	+		PP_2639	0.73	+0.7
3,023,957	-		PP_2639	0.74	+0.7
3,023,957	-		PP_2639	0.74	-1.2
3,024,006	-		PP_2639	0.79	+1.0
3,024,012	+		PP_2639	0.80	-0.3
3,024,293	+				-0.7
3,024,340	+				+0.8
3,024,380	-				+0.1
3,024,428	-		PP_2640	0.19	-2.7
3,024,522	+		PP_2640	0.40	-0.6
3,024,523	-		PP_2640	0.40	-1.2
3,024,523	-		PP_2640	0.40	-0.6
3,024,523	-		PP_2640	0.40	-0.2
3,024,789	+				-1.0
3,024,800	+				-0.2
3,024,800	+				-0.7
3,024,800	+				+0.5
3,024,801	-				+0.7
3,024,837	+				+0.2
3,024,837	+				-1.9
3,024,838	-				-0.3
3,024,838	-				-0.1
3,024,959	-				-0.2
3,025,023	+		PP_2641	0.10	-1.3
3,025,024	-		PP_2641	0.10	-0.3
3,025,114	+		PP_2641	0.15	-0.7
3,025,114	+		PP_2641	0.15	-0.1
3,025,115	-		PP_2641	0.15	+0.6
3,025,116	+				+0.2
3,025,117	-		PP_2641	0.16	-0.4
3,025,228	+		PP_2641	0.22	-0.2
3,025,228	+		PP_2641	0.22	+0.9
3,025,236	+		PP_2641	0.22	+0.6
3,025,236	+		PP_2641	0.22	-1.2
3,025,298	+		PP_2641	0.26	+0.7
3,025,299	-		PP_2641	0.26	+0.2
3,025,299	-		PP_2641	0.26	-0.3
3,025,362	+		PP_2641	0.29	+0.3
3,025,363	-		PP_2641	0.29	+1.0
3,025,405	+		PP_2641	0.32	+0.2
3,025,442	-		PP_2641	0.34	-2.8
3,025,522	-		PP_2641	0.38	-0.3
3,025,692	+		PP_2641	0.48	-0.9
3,025,692	+		PP_2641	0.48	+0.5
3,025,692	+		PP_2641	0.48	-0.7
3,025,692	+		PP_2641	0.48	+0.0
3,025,692	+		PP_2641	0.48	-0.9
3,025,693	-		PP_2641	0.48	-0.4
3,025,742	+		PP_2641	0.50	+0.5
3,025,742	+		PP_2641	0.50	-0.4
3,025,742	+		PP_2641	0.50	+0.6
3,025,744	+		PP_2641	0.50	+0.4
3,025,744	+		PP_2641	0.50	+0.2