Strain Fitness in Pseudomonas putida KT2440 around PP_1983

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,245,451	-				+0.9
2,245,528	+				+0.6
2,245,529	-				+1.0
2,245,538	+				+0.6
2,245,603	-				+0.3
2,245,664	-				+0.2
2,245,695	+				-0.9
2,245,732	-				+0.6
2,245,739	+				-0.7
2,245,739	+				+0.3
2,245,740	-				+0.4
2,245,761	+				-0.1
2,245,762	-				+0.0
2,245,773	+				-1.1
2,245,773	+				-0.5
2,245,774	-				+0.1
2,245,873	+		PP_1982	0.25	+0.3
2,245,882	+		PP_1982	0.27	+1.3
2,245,882	+		PP_1982	0.27	-2.1
2,245,882	+		PP_1982	0.27	+0.6
2,245,883	-		PP_1982	0.27	-0.5
2,245,883	-		PP_1982	0.27	+1.1
2,245,883	-		PP_1982	0.27	+0.0
2,245,884	+		PP_1982	0.27	+0.8
2,245,885	-		PP_1982	0.27	+0.1
2,245,885	-		PP_1982	0.27	-0.2
2,246,029	+		PP_1982	0.59	+0.4
2,246,281	-				-0.4
2,246,306	+				-0.2
2,246,306	+				+0.3
2,246,354	-				+0.2
2,246,381	+				-0.5
2,246,577	-				-0.1
2,246,592	-				-0.3
2,246,677	+				-0.7
2,246,677	+		PP_1983	0.11	+0.8
2,246,677	+		PP_1983	0.11	+0.5
2,246,678	-		PP_1983	0.11	+0.7
2,246,791	+		PP_1983	0.15	+0.5
2,246,791	+		PP_1983	0.15	-0.6
2,246,792	-		PP_1983	0.15	-0.5
2,246,792	-		PP_1983	0.15	-1.1
2,246,977	+		PP_1983	0.20	-0.2
2,246,977	+		PP_1983	0.20	-1.1
2,246,978	-		PP_1983	0.21	-0.0
2,246,978	-		PP_1983	0.21	+0.0
2,246,978	-		PP_1983	0.21	+0.8
2,246,978	-		PP_1983	0.21	-0.1
2,247,159	-		PP_1983	0.26	-0.9
2,247,242	-		PP_1983	0.29	-0.3
2,247,532	-				+0.3
2,247,614	+				+3.6
2,247,628	+		PP_1983	0.40	-0.4
2,247,775	+		PP_1983	0.45	+0.4
2,247,849	-		PP_1983	0.47	-0.3
2,247,849	-		PP_1983	0.47	-1.0
2,247,920	-		PP_1983	0.49	+0.3
2,247,921	-		PP_1983	0.49	-0.6
2,248,180	-		PP_1983	0.57	+0.1
2,248,529	+		PP_1983	0.68	+0.4
2,248,558	-		PP_1983	0.68	-0.2
2,248,558	-		PP_1983	0.68	+0.2
2,248,562	+		PP_1983	0.69	-1.3
2,248,563	-		PP_1983	0.69	-0.7
2,248,680	-		PP_1983	0.72	-0.7
2,248,680	-		PP_1983	0.72	-0.2
2,248,809	+		PP_1983	0.76	-0.0
2,248,809	+		PP_1983	0.76	-0.3
2,248,810	-		PP_1983	0.76	+0.3
2,248,810	-		PP_1983	0.76	-0.3
2,248,942	+		PP_1983	0.80	-0.0
2,248,942	+		PP_1983	0.80	+0.2
2,249,370	-				-0.4
2,249,439	+				-0.1
2,249,439	+				+1.7
2,249,459	+				+1.3
2,249,465	-				-1.2
2,249,602	+				-0.5
2,249,603	-				-0.4
2,249,603	-				+0.3
2,249,618	+				+0.0
2,249,618	+				+0.4
2,249,618	+				-0.6
2,249,619	-				-0.2
2,249,619	-				+0.2
2,249,642	+				-0.1
2,249,643	-				-0.5
2,249,643	-				-0.6
2,249,643	-				-0.4
2,249,643	-				+0.8
2,249,723	-				-0.8
2,249,723	-				-2.4
2,249,723	-				+0.0
2,249,723	-				-0.6
2,249,742	+				+1.1
2,249,743	-				-0.3
2,249,743	-				+0.5
2,249,743	-				+0.1
2,249,748	-		PP_1984	0.10	-0.8
2,249,748	-		PP_1984	0.10	+0.1
2,249,765	+		PP_1984	0.12	+1.2
2,249,765	+		PP_1984	0.12	+0.2
2,249,766	-		PP_1984	0.12	-0.3
2,249,868	+		PP_1984	0.24	+1.9
2,249,868	+		PP_1984	0.24	-1.2
2,249,869	-		PP_1984	0.24	-0.4
2,249,929	+		PP_1984	0.31	-0.0
2,249,929	+		PP_1984	0.31	-0.3
2,249,929	+		PP_1984	0.31	+0.0
2,249,929	+		PP_1984	0.31	-0.4
2,249,929	+		PP_1984	0.31	-0.7
2,249,930	-		PP_1984	0.31	+0.0
2,249,930	-		PP_1984	0.31	+0.4
2,249,930	-		PP_1984	0.31	-1.0
2,249,930	-		PP_1984	0.31	+0.3
2,250,179	+		PP_1984	0.59	-0.5
2,250,180	-		PP_1984	0.59	-0.2
2,250,180	-		PP_1984	0.59	-1.6
2,250,307	+		PP_1984	0.74	+1.2
2,250,334	-		PP_1984	0.77	+1.4