Strain Fitness in Pseudomonas putida KT2440 around PP_1280

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,460,479	+		PP_1279	0.16	+0.1
1,460,521	+		PP_1279	0.19	+0.1
1,460,522	-		PP_1279	0.19	-2.3
1,460,590	+		PP_1279	0.25	-0.6
1,460,591	-		PP_1279	0.25	-0.1
1,460,591	-		PP_1279	0.25	+1.1
1,460,762	-		PP_1279	0.40	-0.1
1,460,762	-		PP_1279	0.40	+0.4
1,460,762	-		PP_1279	0.40	-2.4
1,460,762	-		PP_1279	0.40	-0.7
1,460,871	-		PP_1279	0.49	+0.4
1,460,992	+		PP_1279	0.59	-0.2
1,460,992	+		PP_1279	0.59	-0.3
1,460,993	-		PP_1279	0.60	-0.2
1,460,993	-		PP_1279	0.60	-0.0
1,461,035	-		PP_1279	0.63	-0.3
1,461,043	+		PP_1279	0.64	-0.0
1,461,086	+		PP_1279	0.68	-0.8
1,461,210	+		PP_1279	0.78	+0.2
1,461,302	-		PP_1279	0.86	+1.4
1,461,302	-		PP_1279	0.86	+0.0
1,461,430	+				+0.1
1,461,430	+				+0.0
1,461,430	+				-1.2
1,461,441	+				+0.5
1,461,441	+				+0.2
1,461,442	-				+0.4
1,461,442	-				-0.1
1,461,442	-				+0.5
1,461,442	-				+0.4
1,461,480	+				+1.0
1,461,480	+				-0.6
1,461,496	-				-0.7
1,461,496	-				-0.4
1,461,496	-				+0.3
1,461,771	+		PP_1280	0.21	-0.1
1,461,775	+		PP_1280	0.21	+0.2
1,461,775	+		PP_1280	0.21	+0.8
1,461,775	+				+1.0
1,461,775	+		PP_1280	0.21	-1.4
1,461,825	-		PP_1280	0.25	+0.6
1,461,942	+		PP_1280	0.33	-0.0
1,461,942	+		PP_1280	0.33	+0.2
1,461,942	+		PP_1280	0.33	-0.8
1,461,943	-		PP_1280	0.33	+0.1
1,461,943	-		PP_1280	0.33	-1.0
1,461,943	-		PP_1280	0.33	+0.3
1,461,943	-		PP_1280	0.33	-0.6
1,462,002	+		PP_1280	0.37	-0.0
1,462,003	-		PP_1280	0.37	-0.8
1,462,003	-		PP_1280	0.37	-0.5
1,462,006	+		PP_1280	0.37	-0.5
1,462,006	+		PP_1280	0.37	-0.8
1,462,006	+		PP_1280	0.37	+0.2
1,462,007	-		PP_1280	0.37	+0.4
1,462,007	-		PP_1280	0.37	+0.3
1,462,044	+		PP_1280	0.40	+0.8
1,462,044	+				+0.8
1,462,044	+		PP_1280	0.40	-0.8
1,462,044	+		PP_1280	0.40	+0.0
1,462,045	-		PP_1280	0.40	-0.1
1,462,045	-		PP_1280	0.40	-1.0
1,462,045	-		PP_1280	0.40	+0.3
1,462,045	-		PP_1280	0.40	+0.4
1,462,045	-		PP_1280	0.40	-0.7
1,462,050	+				+1.8
1,462,078	+		PP_1280	0.42	-0.2
1,462,079	-		PP_1280	0.42	-0.5
1,462,117	+		PP_1280	0.45	-0.6
1,462,117	+		PP_1280	0.45	-0.6
1,462,118	-		PP_1280	0.45	-1.1
1,462,119	+		PP_1280	0.45	+0.6
1,462,119	+		PP_1280	0.45	-1.3
1,462,120	-		PP_1280	0.45	+0.7
1,462,120	-		PP_1280	0.45	+1.3
1,462,120	-		PP_1280	0.45	-0.2
1,462,206	+		PP_1280	0.51	+0.7
1,462,206	+		PP_1280	0.51	-2.3
1,462,207	-		PP_1280	0.51	-0.8
1,462,221	+		PP_1280	0.52	+0.2
1,462,222	-		PP_1280	0.52	-0.5
1,462,505	+		PP_1280	0.71	-0.2
1,462,506	-		PP_1280	0.71	+0.6
1,462,506	-		PP_1280	0.71	+0.1
1,462,518	+		PP_1280	0.72	+0.0
1,462,518	+		PP_1280	0.72	-0.3
1,462,518	+		PP_1280	0.72	+0.3
1,462,519	-		PP_1280	0.72	+0.6
1,462,539	+		PP_1280	0.74	-0.3
1,462,540	-		PP_1280	0.74	+0.4
1,462,540	-		PP_1280	0.74	+0.3
1,462,540	-		PP_1280	0.74	-0.3
1,462,540	-		PP_1280	0.74	+0.6
1,462,651	-		PP_1280	0.81	-1.4
1,462,750	-		PP_1280	0.88	-0.2
1,462,807	-				+0.3
1,462,807	-				-1.2
1,462,807	-				+0.1
1,462,816	-				+0.2
1,462,816	-				+0.6
1,462,863	+				-0.6
1,462,864	-				+0.5
1,462,866	+				+0.8
1,462,866	+				+0.1
1,462,867	-				+1.2
1,462,867	-				+0.8
1,462,937	-				-0.7
1,463,003	+				+0.7
1,463,003	+				+0.4
1,463,003	+				+0.5
1,463,003	+				+1.0
1,463,003	+				+0.0
1,463,004	-				+0.6
1,463,004	-				-1.6
1,463,004	-				+0.1
1,463,004	-				-0.3
1,463,004	-				-0.3
1,463,094	+				-0.7
1,463,181	+		PP_1281	0.10	-0.8
1,463,401	-		PP_1281	0.30	-0.1
1,463,401	-		PP_1281	0.30	+0.8
1,463,487	+		PP_1281	0.38	+1.0
1,463,566	-		PP_1281	0.45	+0.5
1,463,566	-		PP_1281	0.45	+0.1
1,463,566	-		PP_1281	0.45	+0.2
1,463,579	+		PP_1281	0.46	+0.4
1,463,579	+		PP_1281	0.46	-0.5
1,463,579	+		PP_1281	0.46	+0.1
1,463,580	-		PP_1281	0.46	+0.1
1,463,580	-		PP_1281	0.46	+0.6
1,463,580	-		PP_1281	0.46	-0.2
1,463,770	-		PP_1281	0.63	+0.1
1,463,859	+		PP_1281	0.71	-1.9
1,463,859	+		PP_1281	0.71	+0.9
1,463,859	+		PP_1281	0.71	-0.5
1,463,860	-		PP_1281	0.71	+0.8
1,463,860	-		PP_1281	0.71	+1.2
1,463,860	-		PP_1281	0.71	-0.3