Strain Fitness in Pseudomonas putida KT2440 around PP_1131

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,293,692	-		PP_1129	0.37	-0.6
1,294,141	-				-0.2
1,294,141	-				+0.7
1,294,189	+		PP_1130	0.16	+0.8
1,294,311	+		PP_1130	0.56	-0.1
1,294,311	+		PP_1130	0.56	+0.3
1,294,311	+		PP_1130	0.56	+0.1
1,294,312	-		PP_1130	0.57	-0.4
1,294,312	-		PP_1130	0.57	-0.5
1,294,312	-		PP_1130	0.57	-1.5
1,294,312	-		PP_1130	0.57	-0.4
1,294,312	-		PP_1130	0.57	-0.8
1,294,329	+		PP_1130	0.62	-0.4
1,294,329	+		PP_1130	0.62	-0.5
1,294,329	+		PP_1130	0.62	+0.0
1,294,330	-		PP_1130	0.62	+0.4
1,294,330	-		PP_1130	0.62	-1.5
1,294,365	+		PP_1130	0.74	-0.5
1,294,365	+		PP_1130	0.74	-0.5
1,294,366	-		PP_1130	0.74	-0.3
1,294,366	-		PP_1130	0.74	-1.4
1,294,376	+		PP_1130	0.77	-2.0
1,294,376	+		PP_1130	0.77	-0.2
1,294,452	-				-2.2
1,294,504	+				-1.9
1,294,525	+				-0.6
1,294,525	+				-0.3
1,294,552	+				+0.1
1,294,553	-				+0.0
1,294,607	+		PP_1131	0.19	-0.5
1,294,607	+		PP_1131	0.19	-0.7
1,294,607	+		PP_1131	0.19	-1.1
1,294,608	-		PP_1131	0.19	-0.4
1,294,646	-		PP_1131	0.27	-0.7
1,294,828	-		PP_1131	0.66	-1.2
1,294,892	+		PP_1131	0.80	-0.3
1,294,957	-				-0.6
1,294,957	-				-0.5
1,294,957	-				-0.3
1,294,957	-				+0.4
1,294,988	+				+0.4
1,294,988	+				-0.9
1,294,989	-				+0.3
1,295,128	+				+0.1
1,295,157	+				-0.2
1,295,193	-		PP_1132	0.12	+0.1
1,295,193	-		PP_1132	0.12	+1.9
1,295,209	+		PP_1132	0.13	+0.3
1,295,210	-		PP_1132	0.13	+1.2
1,295,210	-		PP_1132	0.13	-0.6
1,295,384	+		PP_1132	0.28	+0.4
1,295,445	+		PP_1132	0.33	+0.8
1,295,445	+		PP_1132	0.33	-0.0
1,295,446	-		PP_1132	0.33	+0.7
1,295,510	-		PP_1132	0.38	+0.1
1,295,607	+		PP_1132	0.46	-1.2
1,295,607	+		PP_1132	0.46	+0.4
1,295,607	+		PP_1132	0.46	+0.4
1,295,607	+		PP_1132	0.46	-0.0
1,295,608	-		PP_1132	0.46	-0.0
1,295,608	-		PP_1132	0.46	-0.2
1,295,608	-		PP_1132	0.46	-1.2
1,295,608	-		PP_1132	0.46	+0.0
1,295,608	-		PP_1132	0.46	-0.8
1,295,706	+		PP_1132	0.55	+0.4
1,295,707	-		PP_1132	0.55	-0.2
1,295,896	-		PP_1132	0.71	-0.1