Strain Fitness in Pseudomonas putida KT2440 around PP_5350

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
6,097,471	+		PP_5348	0.61	-0.8
6,097,472	-		PP_5348	0.61	+0.1
6,097,472	-		PP_5348	0.61	+0.2
6,097,523	+		PP_5348	0.66	+0.0
6,097,524	-		PP_5348	0.66	-0.1
6,097,524	-		PP_5348	0.66	+0.0
6,097,567	-		PP_5348	0.71	+0.3
6,097,690	-		PP_5348	0.83	-2.2
6,097,702	+		PP_5348	0.85	+0.0
6,097,702	+		PP_5348	0.85	-0.8
6,097,703	-		PP_5348	0.85	-0.3
6,097,703	-		PP_5348	0.85	-0.8
6,097,703	-		PP_5348	0.85	-3.4
6,097,906	+		PP_5730	0.53	-3.2
6,097,906	+		PP_5730	0.53	-0.7
6,097,906	+		PP_5730	0.53	-1.5
6,097,906	+		PP_5730	0.53	-0.8
6,097,906	+		PP_5730	0.53	+0.1
6,097,985	-		PP_5730	0.89	+0.0
6,097,985	-		PP_5730	0.89	+0.9
6,097,985	-		PP_5730	0.89	-0.5
6,097,985	-		PP_5730	0.89	+1.0
6,097,988	+				-0.1
6,097,988	+				+0.1
6,097,989	-				-0.0
6,097,989	-				-1.4
6,098,026	-				-2.8
6,098,026	-				-0.2
6,098,026	-				+0.5
6,098,026	-				-1.0
6,098,026	-				-0.1
6,098,027	+				-1.9
6,098,028	+				-0.5
6,098,060	+				-0.5
6,098,061	-				+0.1
6,098,110	-				+0.6
6,098,159	+				+0.1
6,098,160	-				-0.7
6,098,161	+				-1.1
6,098,174	+				+0.9
6,098,175	-				+0.7
6,098,175	-				-0.9
6,098,175	-				+1.5
6,098,309	-		PP_5350	0.10	-1.4
6,098,388	+		PP_5350	0.19	-0.4
6,098,389	-		PP_5350	0.19	-2.4
6,098,389	-		PP_5350	0.19	+0.1
6,098,389	-		PP_5350	0.19	-0.9
6,098,435	+		PP_5350	0.25	-1.3
6,098,436	-		PP_5350	0.25	-0.2
6,098,545	+		PP_5350	0.37	-2.5
6,098,611	-		PP_5350	0.45	-2.3
6,098,611	-		PP_5350	0.45	-1.0
6,098,611	-		PP_5350	0.45	-0.7
6,098,689	-				-0.1
6,098,689	-		PP_5350	0.54	-0.7
6,098,808	+		PP_5350	0.68	-3.4
6,098,954	-		PP_5350	0.84	+0.1
6,099,071	-				+0.2
6,099,103	+				+0.9
6,099,125	-				+0.7
6,099,125	-				-0.1
6,099,136	-				+0.6
6,099,136	-				-0.4
6,099,139	+				-0.4
6,099,139	+				-2.7
6,099,140	-				+0.4
6,099,142	-				-0.6
6,099,144	+				-2.6
6,099,197	+				+0.6
6,099,197	+				+0.3
6,099,197	+				+0.3
6,099,198	-				-1.7
6,099,198	-				-2.2
6,099,267	+				-1.4
6,099,267	+				-2.8
6,099,268	-				+0.1
6,099,348	+		PP_5351	0.12	-0.4
6,099,349	-		PP_5351	0.12	-0.0
6,099,349	-		PP_5351	0.12	+0.0
6,099,441	+		PP_5351	0.18	-0.2
6,099,442	-		PP_5351	0.18	-0.2
6,099,442	-		PP_5351	0.18	-0.7
6,099,493	-		PP_5351	0.22	+0.2
6,099,493	-		PP_5351	0.22	-1.1
6,099,528	+		PP_5351	0.24	+0.7
6,099,528	+		PP_5351	0.24	-0.7
6,099,529	-		PP_5351	0.24	-0.2
6,099,715	-		PP_5351	0.37	-0.3
6,099,839	-		PP_5351	0.45	+0.1
6,099,855	+		PP_5351	0.47	+0.4
6,099,855	+		PP_5351	0.47	+0.7
6,099,856	-		PP_5351	0.47	-0.5
6,099,856	-		PP_5351	0.47	+0.9
6,099,856	-		PP_5351	0.47	+0.3
6,099,859	-		PP_5351	0.47	-0.4
6,099,876	-		PP_5351	0.48	+0.6
6,099,962	-				+0.3
6,100,044	+		PP_5351	0.59	+2.0
6,100,083	+		PP_5351	0.62	-1.9
6,100,084	-		PP_5351	0.62	-0.7
6,100,086	+		PP_5351	0.62	+0.6
6,100,086	+		PP_5351	0.62	-1.2
6,100,086	+		PP_5351	0.62	+0.9
6,100,087	-		PP_5351	0.62	-1.0
6,100,087	-		PP_5351	0.62	-0.1