Strain Fitness in Pseudomonas putida KT2440 around PP_4798

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
5,460,633	-				+0.3
5,460,710	+				-0.6
5,460,732	+				+0.4
5,460,738	+				-0.3
5,460,738	+				+0.0
5,460,760	-				-0.4
5,460,760	-				+0.0
5,460,761	+				+0.9
5,460,761	+				-2.1
5,460,761	+				+1.6
5,460,761	+				-0.5
5,460,761	+				-1.2
5,460,762	-				-0.7
5,460,762	-				+0.7
5,460,762	-				+0.7
5,460,762	-				-0.4
5,460,762	-				-0.3
5,460,762	-				-0.4
5,460,762	-				-0.5
5,460,797	-				+0.0
5,460,942	-		PP_4797	0.64	+0.2
5,460,983	+		PP_4797	0.89	-1.4
5,460,984	-				-1.0
5,461,024	+				+1.4
5,461,024	+				-1.0
5,461,024	+				-0.1
5,461,024	+				+0.6
5,461,025	-				-1.2
5,461,025	-				+0.1
5,461,025	-				-0.7
5,461,025	-				+0.4
5,461,025	-				-0.2
5,461,409	+		PP_4798	0.26	+0.5
5,461,410	-		PP_4798	0.26	+0.3
5,461,503	-		PP_4798	0.34	-0.5
5,461,748	+		PP_4798	0.52	-0.4
5,461,748	+		PP_4798	0.52	-0.9
5,461,749	-		PP_4798	0.52	-0.3
5,461,835	+		PP_4798	0.59	+0.3
5,461,835	+		PP_4798	0.59	+0.0
5,461,835	+		PP_4798	0.59	+1.5
5,461,836	-		PP_4798	0.59	+0.2
5,461,885	-		PP_4798	0.63	+0.4
5,461,885	-		PP_4798	0.63	+0.8
5,461,885	-		PP_4798	0.63	-0.3
5,461,999	+		PP_4798	0.71	-0.6
5,462,091	-		PP_4798	0.78	-0.2
5,462,091	-		PP_4798	0.78	+0.5
5,462,108	+		PP_4798	0.79	-0.3
5,462,108	+		PP_4798	0.79	-0.1
5,462,109	-		PP_4798	0.80	-0.8
5,462,109	-		PP_4798	0.80	+0.1
5,462,255	-				+0.7
5,462,281	+				-2.4
5,462,375	+				-0.5
5,462,376	-				-0.1
5,462,376	-				-0.1
5,462,492	+				-2.3
5,462,492	+				-3.1
5,462,493	-				-1.1
5,462,493	-				-0.3
5,462,493	-				-3.2
5,462,558	-		PP_4799	0.16	-2.3
5,462,558	-		PP_4799	0.16	-2.5
5,462,558	-		PP_4799	0.16	-1.6
5,462,590	+		PP_4799	0.19	-1.5
5,462,591	-		PP_4799	0.19	-2.3
5,462,973	+		PP_4799	0.60	-2.7
5,462,983	+		PP_4799	0.61	-2.2
5,462,984	-		PP_4799	0.61	-1.6
5,463,202	+		PP_4799	0.84	-1.8
5,463,202	+		PP_4799	0.84	-3.5