Strain Fitness in Pseudomonas putida KT2440 around PP_4769

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
5,428,884	-		PP_4767	0.79	+0.1
5,428,884	-		PP_4767	0.79	-0.1
5,428,918	+		PP_4767	0.83	-0.4
5,428,919	-		PP_4767	0.83	-0.8
5,429,002	+				-0.2
5,429,003	-				-1.0
5,429,003	-				-0.2
5,429,003	-				+0.4
5,429,006	+				-0.0
5,429,006	+				+0.6
5,429,006	+				+0.2
5,429,006	+				+0.2
5,429,006	+				+0.8
5,429,006	+				-1.3
5,429,006	+				-0.2
5,429,007	-				+0.4
5,429,007	-				+0.7
5,429,023	+				-1.4
5,429,024	-				-0.1
5,429,024	-				-0.2
5,429,117	-				-0.6
5,429,144	-				-1.8
5,429,231	+				+0.4
5,429,232	-				-0.2
5,429,330	-		PP_4768	0.18	-1.0
5,429,330	-		PP_4768	0.18	-0.7
5,429,330	-		PP_4768	0.18	+1.7
5,429,342	+		PP_4768	0.20	-4.6
5,429,342	+		PP_4768	0.20	-1.1
5,429,531	+		PP_4768	0.51	+0.6
5,429,532	-		PP_4768	0.51	-1.4
5,429,790	+				-0.2
5,429,791	-				-0.7
5,429,820	+				-0.5
5,429,820	+				-0.6
5,429,820	+				+0.9
5,429,821	-				-0.0
5,429,821	-				+0.4
5,429,840	+				+0.1
5,429,876	+				+0.2
5,429,877	-				-1.1
5,429,927	+		PP_4769	0.18	-1.7
5,429,927	+				+1.1
5,429,928	-		PP_4769	0.19	-1.1
5,429,928	-		PP_4769	0.19	-0.9
5,430,048	+		PP_4769	0.44	-0.4
5,430,182	+		PP_4769	0.71	+0.3
5,430,240	-		PP_4769	0.84	-0.3
5,430,275	+				-0.4
5,430,275	+				+1.3
5,430,276	-				-0.0
5,430,276	-				+0.1
5,430,278	+				-0.3
5,430,278	+				-0.1
5,430,279	-				-0.3
5,430,279	-				+0.1
5,430,279	-				-0.5
5,430,279	-				+0.0
5,430,466	+				-0.0
5,430,466	+				+0.5
5,430,486	+				+0.7
5,430,487	-				+1.0
5,430,487	-				-0.1
5,430,544	-				+0.4
5,430,616	+		PP_4770	0.18	+0.7
5,430,617	-		PP_4770	0.18	+1.2
5,430,869	+		PP_4770	0.51	+0.6
5,430,870	-		PP_4770	0.52	-1.8
5,430,870	-		PP_4770	0.52	+0.8
5,431,098	+		PP_4770	0.82	+0.4
5,431,098	+		PP_4770	0.82	-0.6
5,431,099	-		PP_4770	0.82	+0.7
5,431,099	-		PP_4770	0.82	-0.2
5,431,099	-		PP_4770	0.82	-0.7
5,431,099	-		PP_4770	0.82	+1.4
5,431,099	-		PP_4770	0.82	+0.5
5,431,099	-		PP_4770	0.82	-0.3
5,431,099	-		PP_4770	0.82	+0.3
5,431,101	+		PP_4770	0.82	+0.6
5,431,102	-		PP_4770	0.82	-2.0
5,431,102	-		PP_4770	0.82	+0.4
5,431,289	+				-0.1
5,431,289	+				-1.5