Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4503 and PP_4504 are separated by 162 nucleotides PP_4504 and PP_4505 are separated by 58 nucleotides
PP_4503: PP_4503 - DNA-binding response regulator, at 5,116,912 to 5,117,589
_4503
PP_4504: PP_4504 - conserved exported protein of unknown function, at 5,117,752 to 5,118,168
_4504
PP_4505: PP_4505 - Sensor histidine kinase, at 5,118,227 to 5,119,567
_4505
Position (kb) 5117
5118
5119 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5116.774 kb on - strand at 5116.832 kb on + strand at 5116.832 kb on + strand at 5116.832 kb on + strand at 5116.833 kb on - strand at 5116.833 kb on - strand at 5116.835 kb on - strand at 5116.835 kb on - strand at 5117.060 kb on + strand, within PP_4503 at 5117.259 kb on - strand, within PP_4503 at 5117.318 kb on - strand, within PP_4503 at 5117.473 kb on + strand, within PP_4503 at 5117.474 kb on - strand, within PP_4503 at 5117.549 kb on + strand at 5117.550 kb on - strand at 5117.550 kb on - strand at 5117.572 kb on + strand at 5117.573 kb on - strand at 5117.575 kb on + strand at 5117.575 kb on + strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.578 kb on + strand at 5117.579 kb on - strand at 5117.579 kb on - strand at 5117.587 kb on + strand at 5117.587 kb on + strand at 5117.658 kb on + strand at 5117.658 kb on + strand at 5117.659 kb on - strand at 5117.669 kb on + strand at 5117.670 kb on - strand at 5117.960 kb on - strand, within PP_4504 at 5117.960 kb on - strand, within PP_4504 at 5118.166 kb on + strand at 5118.166 kb on + strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.221 kb on + strand at 5118.222 kb on - strand at 5118.393 kb on - strand, within PP_4505 at 5118.587 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.626 kb on + strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.804 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,116,774 - -0.1 5,116,832 + -0.9 5,116,832 + +0.4 5,116,832 + +0.1 5,116,833 - +0.4 5,116,833 - -0.4 5,116,835 - -0.8 5,116,835 - +0.3 5,117,060 + PP_4503 0.22 +0.7 5,117,259 - PP_4503 0.51 -0.2 5,117,318 - PP_4503 0.60 -0.9 5,117,473 + PP_4503 0.83 -0.7 5,117,474 - PP_4503 0.83 +0.1 5,117,549 + -1.3 5,117,550 - +0.6 5,117,550 - -0.2 5,117,572 + -1.2 5,117,573 - -1.3 5,117,575 + -1.2 5,117,575 + -0.5 5,117,576 - -0.8 5,117,576 - +0.1 5,117,576 - -1.0 5,117,576 - +0.4 5,117,576 - -0.5 5,117,576 - +0.6 5,117,578 + -0.2 5,117,579 - +0.6 5,117,579 - -1.0 5,117,587 + -0.1 5,117,587 + +0.1 5,117,658 + +0.6 5,117,658 + +0.6 5,117,659 - -0.2 5,117,669 + +0.2 5,117,670 - +1.0 5,117,960 - PP_4504 0.50 -0.9 5,117,960 - PP_4504 0.50 -0.7 5,118,166 + -3.9 5,118,166 + +0.7 5,118,167 - -0.3 5,118,167 - -1.3 5,118,167 - +0.4 5,118,221 + -1.2 5,118,222 - -0.6 5,118,393 - PP_4505 0.12 -0.0 5,118,587 + PP_4505 0.27 +0.2 5,118,614 + PP_4505 0.29 -2.0 5,118,614 + PP_4505 0.29 +0.4 5,118,626 + PP_4505 0.30 -0.1 5,118,627 - PP_4505 0.30 +0.0 5,118,627 - PP_4505 0.30 +0.5 5,118,803 + PP_4505 0.43 +0.5 5,118,803 + PP_4505 0.43 -0.3 5,118,803 + PP_4505 0.43 +0.5 5,118,803 + PP_4505 0.43 -0.0 5,118,803 + PP_4505 0.43 +0.2 5,118,804 - PP_4505 0.43 +0.7 5,118,925 - PP_4505 0.52 +0.3 5,118,925 - PP_4505 0.52 -0.3
Or see this region's nucleotide sequence