Strain Fitness in Pseudomonas putida KT2440 around PP_4261

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,844,305	+		PP_4259	0.81	-0.2
4,844,306	-		PP_4259	0.81	-0.9
4,844,306	-		PP_4259	0.81	+0.1
4,844,306	-		PP_4259	0.81	-1.7
4,844,318	+		PP_4259	0.82	-0.3
4,844,319	-		PP_4259	0.82	-1.5
4,844,347	+		PP_4259	0.84	+1.2
4,844,347	+		PP_4259	0.84	+1.1
4,844,347	+		PP_4259	0.84	-0.4
4,844,575	+				-2.5
4,844,575	+				-0.6
4,844,576	-				-1.3
4,844,614	+				+0.4
4,844,614	+				-0.9
4,844,614	+				+0.4
4,844,615	-				-0.7
4,844,615	-				-0.7
4,844,615	-				+0.4
4,844,615	-				-0.9
4,844,615	-				-0.4
4,844,728	+		PP_4260	0.27	-0.4
4,844,728	+		PP_4260	0.27	-1.2
4,844,728	+		PP_4260	0.27	-1.0
4,844,729	-		PP_4260	0.27	-2.1
4,844,729	-		PP_4260	0.27	+1.2
4,844,729	-		PP_4260	0.27	+0.2
4,844,729	-		PP_4260	0.27	-0.7
4,844,731	+		PP_4260	0.28	+0.1
4,844,732	-		PP_4260	0.28	-1.0
4,844,951	-		PP_4260	0.69	+0.3
4,844,951	-		PP_4260	0.69	-0.1
4,844,951	-		PP_4260	0.69	+2.3
4,845,023	+		PP_4260	0.83	+0.4
4,845,112	+				-1.2
4,845,113	-				+0.2
4,845,113	-				-2.8
4,845,160	+				-0.5
4,845,226	+				-0.0
4,845,227	-				-0.7
4,845,227	-				+1.2
4,845,227	-				-1.5
4,845,227	-				+0.1
4,845,250	+				+0.3
4,845,251	-				-1.6
4,845,402	-				+0.9
4,845,404	+				-1.6
4,845,404	+				-0.1
4,845,405	-				-1.3
4,845,405	-				+0.2
4,845,405	-				-1.7
4,845,405	-				-3.9
4,845,456	+				+1.3
4,845,456	+				-0.8
4,845,456	+				-1.1
4,845,457	-				+0.2
4,845,457	-				-1.8
4,845,457	-				-1.7
4,845,476	+				-0.3
4,845,675	+		PP_4261	0.17	-0.2
4,845,676	-		PP_4261	0.17	-0.6
4,845,717	-		PP_4261	0.19	-1.6
4,845,731	+		PP_4261	0.19	-0.5
4,845,732	-		PP_4261	0.19	-1.6
4,845,933	-		PP_4261	0.28	-2.6
4,846,073	+		PP_4261	0.33	-0.8
4,846,073	+		PP_4261	0.33	-2.0
4,846,074	-		PP_4261	0.33	-1.6
4,846,246	-		PP_4261	0.40	-0.7
4,846,353	-		PP_4261	0.45	-3.1
4,846,396	+		PP_4261	0.46	-1.2
4,846,623	+		PP_4261	0.55	-0.7
4,846,624	-		PP_4261	0.55	-0.0
4,846,944	+		PP_4261	0.68	-2.9
4,846,944	+		PP_4261	0.68	-2.9
4,846,945	-		PP_4261	0.68	-0.0
4,847,011	+		PP_4261	0.71	-2.0
4,847,012	-		PP_4261	0.71	-2.7
4,847,352	+		PP_4261	0.85	-0.3
4,847,528	+				-1.6
4,847,528	+				-1.6
4,847,529	-				+0.2
4,847,529	-				+0.3
4,847,529	-				+3.3
4,847,529	-				+0.9
4,847,529	-				-0.7
4,847,530	+				+0.6
4,847,531	-				-2.6
4,847,716	+				-0.1
4,847,716	+				+0.2
4,847,716	+				-2.6
4,847,716	+				-0.5
4,847,716	+				+0.4
4,847,716	+				-0.2
4,847,717	-				+0.6
4,847,761	+		PP_4262	0.26	-2.4
4,847,761	+		PP_4262	0.26	+0.3
4,847,761	+		PP_4262	0.26	+0.4
4,847,762	-		PP_4262	0.27	+0.2
4,847,762	-		PP_4262	0.27	+3.1
4,847,762	-		PP_4262	0.27	-1.2
4,848,010	-		PP_4263	0.14	-1.0
4,848,089	+		PP_4263	0.26	-1.6
4,848,201	-		PP_4263	0.42	-0.5
4,848,266	-		PP_4263	0.52	-0.9
4,848,266	-		PP_4263	0.52	+0.1
4,848,362	+		PP_4263	0.66	+0.2
4,848,362	+		PP_4263	0.66	-3.3
4,848,362	+		PP_4263	0.66	-0.5
4,848,363	-		PP_4263	0.66	-1.8
4,848,540	+				+1.6
4,848,540	+				+0.9
4,848,541	-				-1.4
4,848,541	-				-0.4
4,848,695	-				-0.8