Strain Fitness in Pseudomonas putida KT2440 around PP_3522

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,994,550	+		PP_3521	0.21	-0.5
3,994,551	-		PP_3521	0.22	-0.3
3,994,589	+		PP_3521	0.26	+0.4
3,994,589	+		PP_3521	0.26	+0.7
3,994,589	+		PP_3521	0.26	+0.3
3,994,590	-		PP_3521	0.26	-0.1
3,994,590	-		PP_3521	0.26	+0.6
3,994,590	-		PP_3521	0.26	+0.9
3,994,590	-				-2.3
3,994,643	-		PP_3521	0.32	+0.0
3,994,643	-		PP_3521	0.32	-0.0
3,994,643	-		PP_3521	0.32	+0.1
3,994,724	-		PP_3521	0.41	-0.3
3,994,728	+		PP_3521	0.42	-0.1
3,994,728	+		PP_3521	0.42	-0.1
3,994,728	+		PP_3521	0.42	-0.7
3,994,728	+		PP_3521	0.42	+0.0
3,994,728	+		PP_3521	0.42	-0.2
3,994,728	+		PP_3521	0.42	-0.4
3,994,728	+		PP_3521	0.42	+0.5
3,994,729	-		PP_3521	0.42	-0.8
3,994,729	-		PP_3521	0.42	+0.3
3,994,729	-		PP_3521	0.42	+1.0
3,994,730	+		PP_3521	0.42	-0.1
3,994,730	+		PP_3521	0.42	-1.4
3,994,730	+		PP_3521	0.42	+0.7
3,994,730	+		PP_3521	0.42	+0.7
3,994,731	-		PP_3521	0.42	+0.0
3,994,731	-		PP_3521	0.42	+0.3
3,994,731	-		PP_3521	0.42	-0.2
3,994,856	-		PP_3521	0.56	-2.3
3,994,955	+		PP_3521	0.68	-1.1
3,994,980	-		PP_3521	0.71	+0.3
3,995,229	+				-0.5
3,995,230	-				+0.4
3,995,230	-				+0.3
3,995,230	-				-0.5
3,995,266	+				+0.5
3,995,269	-				+0.2
3,995,269	-				+1.1
3,995,279	-				+1.5
3,995,297	+				+0.3
3,995,299	+				-0.7
3,995,299	+				+0.5
3,995,299	+				+0.6
3,995,299	+				+0.0
3,995,300	-				-0.5
3,995,300	-				-0.0
3,995,300	-				-1.4
3,995,300	-				-0.4
3,995,300	-				-0.5
3,995,300	-				-0.3
3,995,761	+		PP_3522	0.89	-1.0
3,995,761	+		PP_3522	0.89	-0.7
3,995,762	-		PP_3522	0.89	-1.2
3,995,762	-		PP_3522	0.89	+0.1
3,995,781	+				-0.3
3,995,782	-				+0.6
3,995,782	-				-0.3
3,995,782	-				-1.8
3,995,782	-				+0.3
3,995,852	+				+1.6
3,995,852	+				-0.7
3,995,892	-				+0.8
3,995,948	+				-0.2
3,995,948	+				-0.3
3,996,050	+		PP_3523	0.24	+1.6
3,996,051	-		PP_3523	0.24	-2.0
3,996,210	-		PP_3523	0.68	-2.8
3,996,241	-		PP_3523	0.77	+0.1
3,996,260	+		PP_3523	0.82	+1.3
3,996,260	+		PP_3523	0.82	-1.2
3,996,260	+		PP_3523	0.82	-0.0
3,996,261	-		PP_3523	0.83	+1.2
3,996,261	-		PP_3523	0.83	+0.8
3,996,450	-		PP_3524	0.25	-0.6
3,996,601	+		PP_3524	0.70	-0.8
3,996,601	+		PP_3524	0.70	+0.1
3,996,601	+		PP_3524	0.70	+0.7
3,996,601	+		PP_3524	0.70	-2.2
3,996,601	+		PP_3524	0.70	-2.0
3,996,602	-		PP_3524	0.71	-1.0
3,996,602	-		PP_3524	0.71	+1.0
3,996,602	-		PP_3524	0.71	+0.9