Strain Fitness in Pseudomonas putida KT2440 around PP_3372

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,815,451	+		PP_3371	0.47	+1.1
3,815,471	+		PP_3371	0.48	+0.0
3,815,471	+				+0.8
3,815,499	-		PP_3371	0.51	+0.5
3,815,499	-		PP_3371	0.51	+0.3
3,815,499	-		PP_3371	0.51	-0.1
3,815,687	-		PP_3371	0.66	+0.2
3,815,890	+		PP_3371	0.82	-0.3
3,815,891	-		PP_3371	0.82	+1.3
3,815,898	+		PP_3371	0.82	+0.5
3,815,898	+		PP_3371	0.82	+0.8
3,816,139	-				-0.7
3,816,414	-		PP_3372	0.42	-1.2
3,816,457	-		PP_3372	0.48	-0.4
3,816,477	-		PP_3372	0.51	-0.3
3,816,528	+		PP_3372	0.58	+0.1
3,816,528	+		PP_3372	0.58	-0.2
3,816,528	+		PP_3372	0.58	-2.5
3,816,528	+		PP_3372	0.58	-0.3
3,816,528	+		PP_3372	0.58	-0.7
3,816,528	+		PP_3372	0.58	-1.0
3,816,529	-		PP_3372	0.58	-0.7
3,816,529	-		PP_3372	0.58	+0.5
3,816,529	-		PP_3372	0.58	-0.8
3,816,610	+		PP_3372	0.70	-1.9
3,816,610	+				-1.9
3,816,611	-		PP_3372	0.70	-1.0
3,816,611	-		PP_3372	0.70	-1.4
3,816,763	-				-2.6
3,816,832	-				+0.9
3,816,832	-				-0.5
3,816,900	+				+0.6
3,816,901	-				+0.2
3,816,901	-				+0.0
3,816,911	-				-0.0
3,817,025	-				+0.3
3,817,025	-				-1.6
3,817,436	-				+0.7
3,817,436	-		PP_3373	0.18	-2.9
3,817,436	-		PP_3373	0.18	+0.1
3,817,436	-		PP_3373	0.18	+0.6