Strain Fitness in Pseudomonas putida KT2440 around PP_3370

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,812,876	+				-1.8
3,812,876	+				+0.1
3,812,877	-				-0.2
3,812,884	+				+0.8
3,812,889	+				-0.5
3,812,897	+				-0.0
3,812,897	+				+0.8
3,812,898	-				+1.0
3,812,898	-				-0.4
3,813,089	+		PP_3369	0.19	-0.6
3,813,090	-		PP_3369	0.19	-0.5
3,813,300	+		PP_3369	0.44	-1.2
3,813,300	+		PP_3369	0.44	+0.0
3,813,301	-		PP_3369	0.44	-0.7
3,813,419	+		PP_3369	0.58	-1.0
3,813,419	+		PP_3369	0.58	-0.3
3,813,420	-		PP_3369	0.58	-0.9
3,813,461	+		PP_3369	0.63	+1.1
3,813,461	+		PP_3369	0.63	+0.3
3,813,765	+				+1.8
3,813,837	+				+0.5
3,813,838	-				+0.5
3,813,879	-				-0.0
3,813,882	+				+0.1
3,813,882	+				+0.2
3,813,882	+				+0.6
3,813,882	+				+0.6
3,813,883	-				+2.2
3,813,883	-				-1.1
3,814,053	-		PP_3370	0.18	+1.1
3,814,053	-		PP_3370	0.18	+1.0
3,814,053	-		PP_3370	0.18	+0.2
3,814,053	-		PP_3370	0.18	+0.9
3,814,103	-		PP_3370	0.23	+1.9
3,814,250	+		PP_3370	0.38	+0.4
3,814,250	+		PP_3370	0.38	+0.6
3,814,250	+		PP_3370	0.38	-1.0
3,814,250	+		PP_3370	0.38	+0.1
3,814,250	+		PP_3370	0.38	+1.4
3,814,250	+		PP_3370	0.38	-0.2
3,814,250	+		PP_3370	0.38	-0.3
3,814,250	+		PP_3370	0.38	+0.1
3,814,250	+		PP_3370	0.38	+1.6
3,814,251	-		PP_3370	0.38	+0.6
3,814,251	-				-0.7
3,814,262	+		PP_3370	0.39	+1.1
3,814,262	+		PP_3370	0.39	-0.2
3,814,262	+		PP_3370	0.39	-0.0
3,814,370	+		PP_3370	0.50	+0.7
3,814,370	+		PP_3370	0.50	+0.2
3,814,370	+		PP_3370	0.50	-0.3
3,814,371	-		PP_3370	0.50	-0.3
3,814,371	-				-0.1
3,814,445	+		PP_3370	0.58	+0.5
3,814,460	+		PP_3370	0.59	+0.1
3,814,461	-		PP_3370	0.59	+0.5
3,814,594	-		PP_3370	0.72	-0.0
3,814,594	-		PP_3370	0.72	+0.1
3,814,610	+		PP_3370	0.74	+0.1
3,814,835	+				-2.8
3,814,836	-				+0.1
3,814,836	-				+0.8
3,814,836	-				+0.8
3,814,836	-				+0.6
3,814,865	+				+0.1
3,814,866	-				+0.4
3,814,866	-				+0.5
3,814,866	-				-0.6
3,815,451	+		PP_3371	0.47	+1.1
3,815,471	+		PP_3371	0.48	+0.0
3,815,471	+				+0.8
3,815,499	-		PP_3371	0.51	+0.5
3,815,499	-		PP_3371	0.51	+0.3
3,815,499	-		PP_3371	0.51	-0.1
3,815,687	-		PP_3371	0.66	+0.2