Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3336 and PP_3337 are separated by 103 nucleotides PP_3337 and PP_3338 overlap by 20 nucleotides PP_3338 and PP_3339 are separated by 142 nucleotides PP_3339 and PP_3340 are separated by 78 nucleotides
PP_3336: PP_3336 - conserved protein of unknown function, at 3,775,024 to 3,775,476
_3336
PP_3337: PP_3337 - conserved membrane protein of unknown function, at 3,775,580 to 3,775,975
_3337
PP_3338: PP_3338 - putative cytochrome bd-type quinol oxidase, at 3,775,956 to 3,776,318
_3338
PP_3339: PP_3339 - conserved exported protein of unknown function, at 3,776,461 to 3,776,868
_3339
PP_3340: PP_3340 - putative TonB-dependent receptor, at 3,776,947 to 3,778,998
_3340
Position (kb) 3776
3777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3775.504 kb on + strand at 3775.505 kb on - strand at 3775.535 kb on + strand at 3775.535 kb on + strand at 3775.535 kb on + strand at 3775.566 kb on - strand at 3775.621 kb on - strand, within PP_3337 at 3775.621 kb on - strand, within PP_3337 at 3775.707 kb on - strand, within PP_3337 at 3775.889 kb on + strand, within PP_3337 at 3775.890 kb on - strand, within PP_3337 at 3775.890 kb on - strand, within PP_3337 at 3775.890 kb on - strand, within PP_3337 at 3775.911 kb on + strand, within PP_3337 at 3775.911 kb on + strand, within PP_3337 at 3775.911 kb on + strand, within PP_3337 at 3775.912 kb on - strand, within PP_3337 at 3775.912 kb on - strand, within PP_3337 at 3775.971 kb on - strand at 3776.113 kb on + strand, within PP_3338 at 3776.113 kb on + strand, within PP_3338 at 3776.114 kb on - strand, within PP_3338 at 3776.114 kb on - strand, within PP_3338 at 3776.114 kb on - strand, within PP_3338 at 3776.182 kb on - strand, within PP_3338 at 3776.281 kb on + strand, within PP_3338 at 3776.408 kb on + strand at 3776.431 kb on + strand at 3776.432 kb on - strand at 3776.443 kb on + strand at 3776.747 kb on - strand, within PP_3339 at 3776.747 kb on - strand, within PP_3339 at 3776.749 kb on + strand, within PP_3339 at 3776.750 kb on - strand, within PP_3339 at 3777.088 kb on - strand at 3777.472 kb on + strand, within PP_3340 at 3777.473 kb on - strand, within PP_3340 at 3777.473 kb on - strand, within PP_3340 at 3777.562 kb on + strand, within PP_3340 at 3777.563 kb on - strand, within PP_3340 at 3777.643 kb on + strand, within PP_3340 at 3777.643 kb on + strand, within PP_3340 at 3777.644 kb on - strand, within PP_3340 at 3777.644 kb on - strand, within PP_3340 at 3777.644 kb on - strand, within PP_3340 at 3777.644 kb on - strand, within PP_3340 at 3777.644 kb on - strand, within PP_3340 at 3777.664 kb on + strand, within PP_3340 at 3777.691 kb on + strand, within PP_3340 at 3777.692 kb on - strand, within PP_3340 at 3777.862 kb on + strand, within PP_3340 at 3777.863 kb on - strand, within PP_3340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 3,775,504 + -0.5 3,775,505 - -1.0 3,775,535 + +0.3 3,775,535 + -0.4 3,775,535 + +0.1 3,775,566 - +1.3 3,775,621 - PP_3337 0.10 +0.5 3,775,621 - PP_3337 0.10 -1.9 3,775,707 - PP_3337 0.32 +0.2 3,775,889 + PP_3337 0.78 -0.9 3,775,890 - PP_3337 0.78 -0.4 3,775,890 - PP_3337 0.78 +0.4 3,775,890 - PP_3337 0.78 -0.7 3,775,911 + PP_3337 0.84 +1.1 3,775,911 + PP_3337 0.84 -1.8 3,775,911 + PP_3337 0.84 -0.1 3,775,912 - PP_3337 0.84 +1.0 3,775,912 - PP_3337 0.84 -2.2 3,775,971 - +0.9 3,776,113 + PP_3338 0.43 -1.8 3,776,113 + PP_3338 0.43 +0.5 3,776,114 - PP_3338 0.44 +0.1 3,776,114 - PP_3338 0.44 +0.3 3,776,114 - PP_3338 0.44 -3.9 3,776,182 - PP_3338 0.62 +0.9 3,776,281 + PP_3338 0.90 -0.9 3,776,408 + -0.8 3,776,431 + -0.6 3,776,432 - -3.8 3,776,443 + +0.3 3,776,747 - PP_3339 0.70 -1.3 3,776,747 - PP_3339 0.70 -0.3 3,776,749 + PP_3339 0.71 -0.3 3,776,750 - PP_3339 0.71 -0.9 3,777,088 - +1.1 3,777,472 + PP_3340 0.26 -0.2 3,777,473 - PP_3340 0.26 -2.2 3,777,473 - PP_3340 0.26 -1.3 3,777,562 + PP_3340 0.30 +0.4 3,777,563 - PP_3340 0.30 +1.8 3,777,643 + PP_3340 0.34 +0.8 3,777,643 + PP_3340 0.34 -0.1 3,777,644 - PP_3340 0.34 +0.2 3,777,644 - PP_3340 0.34 -0.3 3,777,644 - PP_3340 0.34 -0.1 3,777,644 - PP_3340 0.34 -0.4 3,777,644 - PP_3340 0.34 -0.2 3,777,664 + PP_3340 0.35 +0.6 3,777,691 + PP_3340 0.36 -0.1 3,777,692 - PP_3340 0.36 -0.2 3,777,862 + PP_3340 0.45 +0.1 3,777,863 - PP_3340 0.45 -0.2
Or see this region's nucleotide sequence