Strain Fitness in Pseudomonas putida KT2440 around PP_3065

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,444,676	-		PP_3063	0.18	+0.7
3,444,761	+		PP_3063	0.28	-0.3
3,444,761	+		PP_3063	0.28	+0.7
3,444,762	-		PP_3063	0.28	+1.0
3,444,762	-		PP_3063	0.28	+1.0
3,444,762	-		PP_3063	0.28	-0.2
3,444,996	-		PP_3063	0.56	-0.8
3,444,996	-		PP_3063	0.56	+0.7
3,444,998	+		PP_3063	0.56	+0.1
3,444,999	-		PP_3063	0.57	-3.0
3,445,154	-		PP_3063	0.75	-1.1
3,445,322	-				+0.4
3,445,341	-				-1.4
3,445,341	-				+0.2
3,445,341	-				+0.1
3,445,401	+		PP_3064	0.29	-0.7
3,445,402	-		PP_3064	0.29	+0.5
3,445,402	-		PP_3064	0.29	-0.0
3,445,620	-				-0.2
3,445,771	+		PP_3065	0.16	-0.9
3,445,829	+		PP_3065	0.21	-1.9
3,445,829	+		PP_3065	0.21	-0.4
3,445,829	+		PP_3065	0.21	-1.8
3,445,829	+		PP_3065	0.21	-0.5
3,445,830	-		PP_3065	0.21	-0.2
3,445,830	-		PP_3065	0.21	-1.5
3,445,925	-		PP_3065	0.30	+0.1
3,446,052	-		PP_3065	0.43	+0.5
3,446,182	+		PP_3065	0.55	-2.3
3,446,182	+		PP_3065	0.55	-0.8
3,446,183	-		PP_3065	0.55	-1.4
3,446,189	+		PP_3065	0.56	-3.1
3,446,189	+		PP_3065	0.56	-1.3
3,446,189	+		PP_3065	0.56	-1.6
3,446,190	-		PP_3065	0.56	-0.1
3,446,190	-		PP_3065	0.56	+0.1
3,446,190	-		PP_3065	0.56	-2.0
3,446,508	-		PP_3065	0.86	-0.3
3,446,533	-		PP_3065	0.89	-0.1
3,446,533	-		PP_3065	0.89	+0.4
3,446,536	+		PP_3065	0.89	-2.0
3,446,554	+				-1.7
3,446,662	+				-2.8
3,446,692	+				-0.1
3,446,693	-				+0.9
3,446,750	+		PP_3066	0.11	+1.2
3,446,750	+		PP_3066	0.11	-0.2
3,446,751	-		PP_3066	0.12	-1.6
3,446,751	-		PP_3066	0.12	+0.2
3,446,770	+		PP_3066	0.15	+0.2
3,446,770	+		PP_3066	0.15	-0.8
3,446,770	+		PP_3066	0.15	-1.2
3,446,770	+		PP_3066	0.15	+0.2
3,446,770	+		PP_3066	0.15	+0.9
3,446,773	+		PP_3066	0.16	-0.1
3,446,773	+		PP_3066	0.16	+0.3
3,446,806	+		PP_3066	0.22	-0.8
3,446,806	+		PP_3066	0.22	+0.1
3,446,855	+		PP_3066	0.30	-0.2
3,446,882	+		PP_3066	0.35	+0.1
3,446,882	+		PP_3066	0.35	+0.1
3,446,882	+		PP_3066	0.35	+0.9
3,446,882	+		PP_3066	0.35	-1.5
3,446,882	+		PP_3066	0.35	-0.5
3,446,883	-		PP_3066	0.36	+0.1
3,446,883	-		PP_3066	0.36	-1.6
3,446,883	-		PP_3066	0.36	-2.4
3,446,883	-		PP_3066	0.36	+0.7
3,446,894	+		PP_3066	0.38	-0.9
3,446,960	+		PP_3066	0.49	-0.2
3,446,978	-		PP_3066	0.53	+0.7
3,447,002	+		PP_3066	0.57	+0.7
3,447,003	-		PP_3066	0.57	+0.1
3,447,050	-		PP_3066	0.66	-0.4
3,447,166	+		PP_3066	0.87	+0.1
3,447,167	-		PP_3066	0.87	-0.2
3,447,209	+				+0.8
3,447,209	+				-0.2
3,447,331	+		PP_5556	0.17	-0.5
3,447,332	-		PP_5556	0.17	-0.1
3,447,332	-		PP_5556	0.17	+0.1
3,447,333	+		PP_5556	0.17	-2.6
3,447,564	+		PP_5556	0.59	+0.9
3,447,564	+		PP_5556	0.59	+0.3
3,447,565	-		PP_5556	0.59	+0.8
3,447,565	-		PP_5556	0.59	+0.0