Strain Fitness in Pseudomonas putida KT2440 around PP_2929

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,330,079	-		PP_2928	0.36	-1.4
3,330,079	-		PP_2928	0.36	-1.3
3,330,079	-		PP_2928	0.36	-1.1
3,330,079	-		PP_2928	0.36	-1.6
3,330,079	-		PP_2928	0.36	+0.8
3,330,165	+		PP_2928	0.43	-2.7
3,330,166	-		PP_2928	0.43	+0.6
3,330,182	+		PP_2928	0.45	-1.5
3,330,202	+		PP_2928	0.46	-0.7
3,330,312	+		PP_2928	0.55	+0.2
3,330,347	-		PP_2928	0.58	+0.4
3,330,347	-				-1.7
3,330,396	+		PP_2928	0.62	+1.6
3,330,397	-		PP_2928	0.62	+0.5
3,330,443	-		PP_2928	0.66	-0.2
3,330,483	+		PP_2928	0.69	+0.2
3,330,484	-		PP_2928	0.69	+1.4
3,330,492	+		PP_2928	0.69	+0.8
3,330,562	+		PP_2928	0.75	+0.2
3,330,781	+				-0.6
3,330,853	+				-0.3
3,330,853	+				-0.8
3,330,888	+				+2.6
3,330,888	+				-1.2
3,330,906	-				-1.4
3,330,906	-				-0.4
3,330,923	+				-0.0
3,330,924	-				-1.8
3,331,139	+		PP_2929	0.21	-2.2
3,331,139	+		PP_2929	0.21	-0.1
3,331,140	-		PP_2929	0.21	-2.1
3,331,140	-		PP_2929	0.21	-1.8
3,331,140	-				-2.0
3,331,140	-		PP_2929	0.21	-0.4
3,331,143	+		PP_2929	0.22	-1.7
3,331,143	+		PP_2929	0.22	-0.9
3,331,143	+		PP_2929	0.22	-1.2
3,331,143	+		PP_2929	0.22	-0.6
3,331,144	-		PP_2929	0.22	-2.5
3,331,144	-		PP_2929	0.22	-1.7
3,331,144	-		PP_2929	0.22	-1.9
3,331,184	+		PP_2929	0.26	-0.8
3,331,185	-				-2.0
3,331,250	+		PP_2929	0.32	-3.4
3,331,250	+		PP_2929	0.32	+0.3
3,331,320	-		PP_2929	0.38	-0.2
3,331,376	-		PP_2929	0.43	+2.1
3,331,382	+		PP_2929	0.44	-0.2
3,331,382	+		PP_2929	0.44	-2.8
3,331,383	-		PP_2929	0.44	-2.8
3,331,616	+		PP_2929	0.65	-0.4
3,331,770	+		PP_2929	0.79	-2.6
3,331,771	-		PP_2929	0.79	-0.3
3,331,772	+		PP_2929	0.79	+0.2
3,331,772	+		PP_2929	0.79	+0.6
3,331,773	-		PP_2929	0.79	-3.6
3,331,773	-		PP_2929	0.79	+0.9
3,331,773	-		PP_2929	0.79	-2.5
3,331,839	+		PP_2929	0.85	+1.2
3,331,850	+		PP_2929	0.86	+1.8
3,331,850	+		PP_2929	0.86	-2.0
3,331,850	+		PP_2929	0.86	+0.0
3,331,850	+		PP_2929	0.86	-2.7
3,331,851	-		PP_2929	0.86	-1.2
3,331,851	-		PP_2929	0.86	-0.2
3,331,851	-		PP_2929	0.86	-1.8
3,331,851	-		PP_2929	0.86	-2.4
3,331,851	-		PP_2929	0.86	-2.4
3,331,851	-		PP_2929	0.86	-1.1
3,331,935	-				-0.9
3,331,982	+				+0.9
3,331,982	+				-2.4
3,331,983	-				-1.8
3,331,983	-				-0.5
3,331,983	-				-1.1
3,332,004	-				+1.1
3,332,004	-				+1.5
3,332,104	-				+0.2
3,332,135	+				+0.7
3,332,136	-				+0.7
3,332,139	-				-1.2
3,332,162	+				-0.4
3,332,162	+				+0.2
3,332,163	-				-0.1
3,332,293	+		PP_2930	0.12	-0.1
3,332,293	+		PP_2930	0.12	+0.8
3,332,293	+		PP_2930	0.12	-0.6
3,332,293	+		PP_2930	0.12	-0.1
3,332,293	+		PP_2930	0.12	-1.2
3,332,294	-		PP_2930	0.12	-1.4
3,332,294	-		PP_2930	0.12	-0.7
3,332,294	-		PP_2930	0.12	-0.7
3,332,294	-		PP_2930	0.12	-0.6
3,332,896	+		PP_2930	0.77	+0.9
3,332,983	-		PP_2930	0.87	-0.5