Strain Fitness in Pseudomonas putida KT2440 around PP_2828

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,226,767	+				-0.2
3,226,768	-				-0.5
3,226,768	-				+0.9
3,226,888	-				+0.2
3,226,888	-				-0.6
3,226,888	-				+0.4
3,226,932	-				+0.4
3,226,932	-				-1.3
3,226,964	+				+0.4
3,226,964	+				+0.5
3,226,964	+				+0.0
3,226,964	+				-2.9
3,226,965	-				-0.3
3,226,973	+				+0.5
3,226,973	+				+0.3
3,226,973	+				+0.1
3,226,973	+				+0.2
3,226,983	+				-2.3
3,226,983	+				+0.5
3,226,984	-				-0.3
3,226,984	-				+0.4
3,226,984	-				-0.9
3,226,984	-				+0.7
3,226,984	-				+0.8
3,226,984	-				-1.2
3,226,984	-				-0.8
3,227,057	-				+0.0
3,227,171	-				+0.9
3,227,192	+				-0.6
3,227,192	+				+1.1
3,227,193	-				+0.2
3,227,193	-				-1.2
3,227,194	+				+0.6
3,227,195	-				-0.1
3,227,268	+				+0.2
3,227,268	+				+0.8
3,227,328	+		PP_2828	0.12	-0.5
3,227,328	+		PP_2828	0.12	-1.3
3,227,959	+		PP_2828	0.58	+0.3
3,228,192	+		PP_2828	0.74	-1.4
3,228,192	+		PP_2828	0.74	-0.6
3,228,193	-		PP_2828	0.74	-1.5
3,228,206	+		PP_2828	0.75	-3.8
3,228,385	+		PP_2828	0.88	-0.2
3,228,423	-				-2.9
3,228,460	+				-0.9
3,228,460	+				+0.7
3,228,461	-				+0.1
3,228,483	+				+0.6
3,228,484	-				-0.9
3,228,484	-				-0.8
3,228,484	-				+0.5
3,228,589	+				-3.8
3,228,589	+				+0.4
3,228,589	+				+0.9
3,228,590	-				+0.8
3,228,590	-				+0.5
3,228,590	-				+1.0
3,228,590	-				+0.6
3,228,595	+				-0.4
3,228,595	+				-2.4
3,228,707	-		PP_2829	0.12	+0.3
3,228,735	-		PP_2829	0.14	+0.8
3,228,760	+		PP_2829	0.16	+0.1
3,228,760	+		PP_2829	0.16	+0.2
3,228,760	+		PP_2829	0.16	-1.5
3,228,760	+		PP_2829	0.16	+0.2
3,228,761	-		PP_2829	0.16	-0.6
3,228,946	+		PP_2829	0.30	-0.1
3,229,256	-		PP_2829	0.52	+0.8
3,229,258	+		PP_2829	0.53	+0.3
3,229,299	-		PP_2829	0.56	-0.5
3,229,299	-		PP_2829	0.56	-1.5
3,229,436	-		PP_2829	0.66	-2.6
3,229,441	+		PP_2829	0.66	+0.2
3,229,442	-		PP_2829	0.66	-0.1
3,229,442	-		PP_2829	0.66	+0.5
3,229,445	+		PP_2829	0.66	+0.7
3,229,446	-		PP_2829	0.66	+0.7