Strain Fitness in Pseudomonas putida KT2440 around PP_2686

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,075,186	+				-0.4
3,075,263	+				-0.5
3,075,338	-				-0.1
3,075,338	-				-1.8
3,075,406	+		PP_2685	0.11	-0.1
3,075,406	+		PP_2685	0.11	-0.3
3,075,407	-		PP_2685	0.11	-1.3
3,075,409	+		PP_2685	0.11	-1.3
3,075,410	-		PP_2685	0.11	+0.8
3,075,410	-		PP_2685	0.11	+0.3
3,075,568	+		PP_2685	0.33	+1.2
3,075,601	+		PP_2685	0.37	-1.2
3,075,667	+		PP_2685	0.47	-0.6
3,075,667	+		PP_2685	0.47	+0.3
3,075,668	-		PP_2685	0.47	-0.3
3,075,676	+		PP_2685	0.48	-0.6
3,075,728	+		PP_2685	0.55	+0.5
3,075,728	+		PP_2685	0.55	+0.2
3,075,729	-		PP_2685	0.55	-0.6
3,075,811	+		PP_2685	0.67	-2.7
3,075,812	-		PP_2685	0.67	+0.5
3,075,873	+		PP_2685	0.75	+0.3
3,075,874	-		PP_2685	0.75	-2.4
3,075,990	-				-0.1
3,075,990	-				+0.2
3,075,990	-				-0.2
3,076,046	-				+0.2
3,076,046	-				-1.6
3,076,212	-		PP_2686	0.11	+0.4
3,076,267	-		PP_2686	0.18	-1.0
3,076,364	+		PP_2686	0.31	-1.2
3,076,364	+		PP_2686	0.31	+1.1
3,076,364	+		PP_2686	0.31	-1.9
3,076,364	+		PP_2686	0.31	-1.0
3,076,364	+		PP_2686	0.31	-0.4
3,076,364	+		PP_2686	0.31	-2.0
3,076,364	+		PP_2686	0.31	-1.2
3,076,364	+		PP_2686	0.31	-2.0
3,076,365	-		PP_2686	0.31	+0.3
3,076,365	-		PP_2686	0.31	-0.1
3,076,690	-		PP_2686	0.72	+0.3
3,076,800	+		PP_2686	0.86	-1.0
3,076,868	+				+1.3
3,076,869	-				-0.3
3,076,872	+				-0.6
3,076,872	+				-1.2
3,076,873	-				+0.3
3,076,873	-				+1.1
3,076,875	-				-1.7
3,076,875	-				-3.6
3,076,875	-				-1.0
3,076,906	-				+1.0
3,076,906	-				+0.3
3,076,906	-				+0.3
3,076,906	-				-0.8
3,076,918	+				+0.2
3,077,191	+		PP_2687	0.30	+0.2
3,077,212	+		PP_2687	0.33	+0.5
3,077,213	-		PP_2687	0.33	-1.0
3,077,249	-		PP_2687	0.36	+0.2
3,077,249	-		PP_2687	0.36	-3.1
3,077,252	-		PP_2687	0.37	+0.6
3,077,305	+				+0.5
3,077,330	+		PP_2687	0.45	+0.8
3,077,331	-		PP_2687	0.45	-0.7
3,077,375	-		PP_2687	0.50	+0.7
3,077,375	-		PP_2687	0.50	+0.1
3,077,543	+		PP_2687	0.67	+0.5
3,077,593	+		PP_2687	0.73	+0.7
3,077,593	+		PP_2687	0.73	+0.3
3,077,594	-		PP_2687	0.73	-0.5
3,077,594	-		PP_2687	0.73	+1.0
3,077,594	-		PP_2687	0.73	-2.4
3,077,674	+		PP_2687	0.81	-0.1
3,077,764	+				-1.0
3,077,765	-				-0.2