Strain Fitness in Pseudomonas putida KT2440 around PP_2623

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,998,009	-		PP_2621	0.68	-0.0
2,998,009	-		PP_2621	0.68	-0.8
2,998,026	+		PP_2621	0.69	+0.2
2,998,063	-		PP_2621	0.71	-0.5
2,998,342	-		PP_2621	0.87	-2.4
2,998,410	-				+0.5
2,998,537	-				+0.9
2,998,655	+		PP_2622	0.19	+0.2
2,998,656	-		PP_2622	0.19	+0.4
2,998,725	-		PP_2622	0.36	-0.4
2,998,730	+		PP_2622	0.37	-0.6
2,999,036	+				+0.4
2,999,037	-				-0.1
2,999,037	-				+0.1
2,999,174	+		PP_2623	0.13	-0.7
2,999,175	-		PP_2623	0.13	-1.5
2,999,292	-		PP_2623	0.21	+0.5
2,999,292	-		PP_2623	0.21	-0.4
2,999,315	+		PP_2623	0.22	+0.4
2,999,413	-		PP_2623	0.29	-0.6
2,999,471	-				+1.5
2,999,648	+		PP_2623	0.45	-1.5
2,999,649	-		PP_2623	0.45	-0.7
2,999,681	+		PP_2623	0.47	+0.1
2,999,681	+		PP_2623	0.47	-0.6
2,999,842	-		PP_2623	0.58	-0.7
2,999,934	-		PP_2623	0.64	-0.3
2,999,939	-		PP_2623	0.64	-1.3
2,999,976	-		PP_2623	0.67	+0.5
3,000,044	+		PP_2623	0.71	+0.7
3,000,044	+		PP_2623	0.71	-2.5
3,000,334	+				-1.5
3,000,373	+				-1.0
3,000,373	+				-0.3
3,000,373	+				-0.2
3,000,374	-				+1.0
3,000,415	-				-0.9
3,000,563	+		PP_2624	0.14	+1.1
3,000,564	-		PP_2624	0.14	-2.4
3,000,564	-		PP_2624	0.14	+1.3
3,000,815	+		PP_2624	0.64	+1.0
3,000,815	+		PP_2624	0.64	-0.9
3,000,815	+		PP_2624	0.64	-0.3
3,000,816	-		PP_2624	0.64	-1.1
3,000,816	-				-0.1
3,001,051	-				-0.1
3,001,083	-				-0.5
3,001,200	+				+0.1
3,001,286	-				-0.1
3,001,338	+				-0.6
3,001,338	+				+0.1
3,001,338	+				+1.0
3,001,339	-				+0.5
3,001,340	+				+0.2
3,001,470	-		PP_2625	0.28	-1.6