Strain Fitness in Pseudomonas putida KT2440 around PP_2540

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,883,608	-				+1.5
2,883,672	+		PP_2539	0.25	+1.4
2,883,764	+		PP_2539	0.35	-0.4
2,883,764	+		PP_2539	0.35	-0.7
2,883,765	-		PP_2539	0.35	-1.7
2,883,777	-		PP_2539	0.36	-0.2
2,883,851	+		PP_2539	0.44	+0.3
2,884,035	-		PP_2539	0.64	+0.7
2,884,035	-		PP_2539	0.64	-0.1
2,884,035	-		PP_2539	0.64	-1.0
2,884,087	+		PP_2539	0.70	-0.4
2,884,414	-				+0.5
2,884,414	-				-0.2
2,884,472	+				-0.3
2,884,472	+				+0.0
2,884,473	-				-0.1
2,884,543	+				+0.7
2,884,543	+				+0.2
2,884,544	-				+0.3
2,884,719	-		PP_2540	0.24	-0.3
2,884,909	+		PP_2540	0.48	-0.4
2,884,910	-		PP_2540	0.48	-2.7
2,884,910	-		PP_2540	0.48	-1.3
2,884,910	-		PP_2540	0.48	-0.8
2,885,224	-		PP_2540	0.89	-0.1
2,885,257	-				+0.5
2,885,307	+				+0.4
2,885,308	-				-0.5
2,885,581	-		PP_2541	0.46	-0.0
2,885,585	+		PP_2541	0.47	+0.3
2,885,585	+		PP_2541	0.47	-0.2
2,885,585	+		PP_2541	0.47	+0.2
2,885,585	+		PP_2541	0.47	+0.3
2,885,586	-		PP_2541	0.47	+0.3
2,885,586	-		PP_2541	0.47	+1.1
2,885,586	-		PP_2541	0.47	-0.2
2,885,606	-		PP_2541	0.51	-3.7
2,885,606	-		PP_2541	0.51	+0.4
2,885,606	-		PP_2541	0.51	+0.6
2,885,661	+		PP_2541	0.61	-1.4
2,885,662	-		PP_2541	0.61	-1.1
2,885,683	+		PP_2541	0.65	+1.5
2,885,683	+		PP_2541	0.65	+1.5
2,885,684	-		PP_2541	0.65	+1.6
2,885,684	-		PP_2541	0.65	+0.5
2,885,929	-				-0.3
2,885,929	-				+0.1
2,886,080	-				-2.9
2,886,110	+				+0.8
2,886,110	+				-1.0
2,886,111	-				-0.4
2,886,111	-				+0.3
2,886,114	-				-0.0
2,886,114	-				-0.2
2,886,114	-				+0.7
2,886,174	-				-0.0
2,886,174	-				+0.8
2,886,193	-				-1.3
2,886,193	-				+0.2
2,886,194	+				-0.3
2,886,194	+				-0.7
2,886,300	+		PP_5536	0.21	-0.2
2,886,300	+		PP_5536	0.21	+1.0