Strain Fitness in Pseudomonas putida KT2440 around PP_2336

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,663,253	+		PP_2335	0.36	+0.9
2,663,253	+		PP_2335	0.36	+1.2
2,663,254	-		PP_2335	0.36	+1.0
2,663,281	+		PP_2335	0.38	-1.8
2,663,282	-		PP_2335	0.38	-1.5
2,663,397	+		PP_2335	0.49	+0.9
2,663,398	-		PP_2335	0.49	+1.1
2,663,637	+		PP_2335	0.70	-0.8
2,663,637	+		PP_2335	0.70	-0.3
2,663,718	+		PP_2335	0.77	+0.5
2,663,787	+		PP_2335	0.83	-0.1
2,663,788	-		PP_2335	0.83	+1.3
2,663,788	-		PP_2335	0.83	-0.5
2,663,788	-		PP_2335	0.83	+0.8
2,663,788	-		PP_2335	0.83	-0.8
2,663,788	-		PP_2335	0.83	-0.2
2,663,788	-		PP_2335	0.83	+1.4
2,663,788	-		PP_2335	0.83	+0.4
2,663,928	+				-3.2
2,663,928	+				+0.6
2,663,929	-				+0.2
2,663,929	-				+0.0
2,663,977	+				-0.1
2,663,977	+				+0.6
2,663,977	+				+0.2
2,663,977	+				+0.3
2,663,977	+				+0.1
2,663,978	-				-1.9
2,663,978	-				-1.2
2,663,978	-				+0.9
2,663,978	-				-0.8
2,663,981	+				+0.7
2,663,981	+				+0.6
2,663,982	-				-2.3
2,663,982	-				-0.2
2,663,982	-				-2.5
2,663,982	-				-2.6
2,663,983	+				+0.1
2,663,984	-				-1.2
2,663,984	-				-1.1
2,663,984	-				-1.1
2,664,043	+				-1.3
2,664,094	+				+0.9
2,664,150	+				+0.4
2,664,184	-				-2.2
2,664,228	+				-3.4
2,664,244	-				-0.8
2,664,951	+				-0.6
2,664,952	-		PP_2336	0.31	-0.7
2,664,952	-		PP_2336	0.31	-2.4
2,665,029	+		PP_2336	0.34	-2.0
2,665,485	+		PP_2336	0.52	+0.8
2,665,569	-				-2.0
2,665,623	+				+3.1
2,665,624	-		PP_2336	0.57	-2.7
2,665,667	+		PP_2336	0.59	-1.5
2,665,722	+		PP_2336	0.61	-1.2
2,665,932	+		PP_2336	0.69	-0.6
2,665,932	+		PP_2336	0.69	-1.4
2,665,956	+		PP_2336	0.70	-2.6
2,665,956	+		PP_2336	0.70	-0.9
2,665,956	+		PP_2336	0.70	-2.0
2,665,957	-		PP_2336	0.70	-0.2
2,665,957	-		PP_2336	0.70	+0.7
2,665,957	-		PP_2336	0.70	+0.7
2,665,957	-		PP_2336	0.70	-0.8
2,666,316	+				-1.5
2,666,316	+		PP_2336	0.84	-0.1
2,666,316	+		PP_2336	0.84	-2.5
2,666,316	+		PP_2336	0.84	-0.8
2,666,448	-		PP_2336	0.89	-1.3
2,666,545	-				-1.6
2,666,565	-				-2.2
2,666,623	+				+1.1
2,666,667	+				+0.3
2,666,667	+				-0.3
2,666,760	+				+0.8
2,666,761	-				-1.8
2,666,773	+				-0.6
2,666,803	-				-3.2
2,666,803	-				+1.1
2,666,828	+				-1.1
2,666,829	-				+1.3
2,666,829	-				+1.3
2,666,829	-				-1.1
2,667,196	+		PP_2337	0.34	+1.1
2,667,196	+		PP_2337	0.34	-0.5
2,667,416	-		PP_2337	0.52	-2.7
2,667,482	+		PP_2337	0.58	-0.2
2,667,483	-		PP_2337	0.58	-2.3
2,667,580	+		PP_2337	0.66	-1.9
2,667,653	+		PP_2337	0.72	+2.0
2,667,653	+		PP_2337	0.72	+0.9