Strain Fitness in Pseudomonas putida KT2440 around PP_2274

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,596,491	+		PP_2273	0.63	+1.3
2,596,492	-		PP_2273	0.63	+0.4
2,596,495	+		PP_2273	0.63	-3.3
2,596,495	+		PP_2273	0.63	-1.2
2,596,495	+		PP_2273	0.63	+0.8
2,596,495	+		PP_2273	0.63	+0.2
2,596,495	+		PP_2273	0.63	+0.3
2,596,495	+		PP_2273	0.63	-1.1
2,596,496	-		PP_2273	0.63	+0.7
2,596,496	-		PP_2273	0.63	-0.1
2,596,496	-		PP_2273	0.63	+0.3
2,596,496	-		PP_2273	0.63	-0.3
2,596,496	-		PP_2273	0.63	-1.8
2,596,617	-		PP_2273	0.69	+0.3
2,596,621	-		PP_2273	0.70	+0.4
2,596,621	-		PP_2273	0.70	+0.1
2,596,923	+		PP_2273	0.85	-3.0
2,596,924	-		PP_2273	0.85	-0.8
2,596,956	-		PP_2273	0.87	-0.7
2,596,956	-		PP_2273	0.87	+0.4
2,596,956	-		PP_2273	0.87	-3.2
2,597,209	+				-0.5
2,597,210	-				-1.9
2,597,251	+		PP_2274	0.15	+0.7
2,597,316	-		PP_2274	0.45	-1.2
2,597,316	-		PP_2274	0.45	-1.0
2,597,316	-		PP_2274	0.45	-2.1
2,597,411	+		PP_2274	0.89	-0.7
2,597,411	+		PP_2274	0.89	-1.6
2,597,449	-				-0.1
2,597,658	-				-0.6
2,597,658	-				+0.8
2,597,675	+				-1.8
2,597,675	+				-0.3
2,597,676	-				+0.1
2,597,676	-				+0.7
2,597,679	-				+1.4
2,597,872	+		PP_2276	0.33	-0.0
2,597,872	+		PP_2276	0.33	-0.2
2,597,872	+		PP_2276	0.33	-0.9
2,597,873	-				+1.5
2,597,873	-		PP_2276	0.33	-0.5
2,597,873	-		PP_2276	0.33	+0.4
2,597,873	-		PP_2276	0.33	-0.2
2,597,886	+		PP_2276	0.35	-0.5
2,597,886	+		PP_2276	0.35	+0.6
2,597,887	-		PP_2276	0.35	-0.1
2,597,887	-		PP_2276	0.35	-0.7
2,598,057	+		PP_2276	0.57	-0.3
2,598,057	+		PP_2276	0.57	-0.3
2,598,057	+		PP_2276	0.57	+0.4
2,598,058	-		PP_2276	0.57	+0.3
2,598,058	-		PP_2276	0.57	-0.2
2,598,058	-		PP_2276	0.57	-0.4
2,598,058	-		PP_2276	0.57	+1.1
2,598,079	+		PP_2276	0.60	-0.5
2,598,079	+		PP_2276	0.60	+0.8
2,598,080	-		PP_2276	0.60	+1.3
2,598,080	-		PP_2276	0.60	-0.0
2,598,080	-		PP_2276	0.60	-1.0
2,598,130	+		PP_2276	0.67	+0.4
2,598,131	-		PP_2276	0.67	-0.7
2,598,142	+		PP_2276	0.69	-0.8
2,598,222	-		PP_2276	0.79	+0.4
2,598,348	-				-0.5