Strain Fitness in Pseudomonas putida KT2440 around PP_2187

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,492,793	-		PP_2185	0.77	-0.3
2,492,852	-		PP_2185	0.79	+0.1
2,492,852	-		PP_2185	0.79	+0.4
2,492,858	+		PP_2185	0.79	-1.2
2,492,858	+		PP_2185	0.79	+1.2
2,492,858	+		PP_2185	0.79	-0.1
2,492,859	-		PP_2185	0.79	-0.7
2,493,054	-		PP_2185	0.86	+0.1
2,493,242	+				+0.3
2,493,242	+				+0.4
2,493,242	+				-0.7
2,493,243	-				-0.4
2,493,243	-				+0.4
2,493,502	+		PP_2186	0.22	+0.4
2,493,502	+		PP_2186	0.22	-2.8
2,493,503	-				-0.1
2,493,503	-		PP_2186	0.23	+0.8
2,493,503	-		PP_2186	0.23	+0.3
2,493,659	-				-1.2
2,493,749	+				-0.1
2,493,750	-				+0.6
2,493,764	+				+0.7
2,493,765	-				-0.3
2,493,772	-				+1.9
2,493,855	+				+0.4
2,493,855	+				+0.2
2,493,856	-				-0.6
2,493,872	+		PP_2187	0.11	-1.4
2,493,950	+		PP_2187	0.20	-0.9
2,494,012	+		PP_2187	0.28	-0.8
2,494,392	+		PP_2187	0.72	-2.1
2,494,392	+		PP_2187	0.72	-0.1
2,494,393	-		PP_2187	0.72	-1.0
2,494,393	-		PP_2187	0.72	-0.2
2,494,393	-		PP_2187	0.72	-1.3
2,494,393	-		PP_2187	0.72	+0.1
2,494,575	-				-0.7
2,494,678	+				+0.3
2,494,679	-				-3.1
2,494,680	+				-1.5
2,494,711	+				-0.6
2,494,712	-				-2.1
2,494,722	+				-1.2
2,494,722	+				+0.9
2,494,723	-				-2.2
2,494,723	-				-0.8
2,494,723	-				-1.8
2,494,723	-				+0.2
2,494,753	+				+0.6
2,494,754	-				-0.7
2,494,791	+				-1.8
2,494,792	-				-1.2
2,494,792	-				+0.0
2,494,945	+		PP_2188	0.25	-0.7
2,494,946	-		PP_2188	0.25	+0.3
2,494,946	-		PP_2188	0.25	+0.5
2,494,946	-		PP_2188	0.25	-0.1
2,495,021	+		PP_2188	0.37	-3.3
2,495,021	+		PP_2188	0.37	+0.1
2,495,022	-		PP_2188	0.37	+0.4
2,495,130	+		PP_2188	0.55	-0.4
2,495,222	-		PP_2188	0.70	+0.2
2,495,222	-		PP_2188	0.70	-0.8
2,495,284	+		PP_2188	0.80	+1.0
2,495,284	+		PP_2188	0.80	+0.7
2,495,284	+		PP_2188	0.80	+0.4
2,495,324	+		PP_2188	0.86	+0.9
2,495,434	-				+0.1
2,495,450	+				-0.7
2,495,451	-				-0.5
2,495,517	+		PP_2189	0.20	+0.5
2,495,518	-		PP_2189	0.20	-0.7