Strain Fitness in Pseudomonas putida KT2440 around PP_2122

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,420,192	+		PP_2120	0.80	-0.0
2,420,192	+		PP_2120	0.80	-1.0
2,420,193	-		PP_2120	0.81	+1.2
2,420,295	+		PP_2120	0.87	+0.1
2,420,295	+		PP_2120	0.87	+0.3
2,420,296	-		PP_2120	0.87	-0.7
2,420,296	-		PP_2120	0.87	+0.1
2,420,296	-		PP_2120	0.87	-0.4
2,420,442	+				-1.9
2,420,443	-				-4.3
2,420,545	+				+1.0
2,420,545	+				-0.0
2,420,546	-				-1.3
2,420,751	+				+0.1
2,420,751	+				+1.6
2,420,752	-				+0.1
2,420,854	+		PP_2121	0.33	+0.7
2,420,855	-		PP_2121	0.33	-1.8
2,420,855	-		PP_2121	0.33	+0.5
2,420,875	+		PP_2121	0.42	-0.8
2,420,922	-		PP_2121	0.64	-1.9
2,421,028	+				-0.1
2,421,029	-				+0.9
2,421,029	-				-0.3
2,421,029	-				+0.5
2,421,029	-				+0.2
2,421,029	-				-1.2
2,421,040	-				-0.8
2,421,040	-				-0.3
2,421,081	+				+1.0
2,421,151	+				-2.2
2,421,151	+				-2.8
2,421,152	-				-0.0
2,421,152	-				-0.2
2,421,154	-				+0.9
2,421,154	-				+0.1
2,421,258	+		PP_2122	0.13	-1.7
2,421,258	+		PP_2122	0.13	-1.2
2,421,258	+		PP_2122	0.13	-0.5
2,421,355	+		PP_2122	0.31	-0.4
2,421,356	-		PP_2122	0.31	+0.0
2,421,435	+		PP_2122	0.45	-0.7
2,421,488	+		PP_2122	0.55	-1.4
2,421,918	-		PP_2123	0.17	+0.3
2,421,918	-		PP_2123	0.17	+1.1
2,421,970	+		PP_2123	0.21	+0.9
2,421,971	-		PP_2123	0.21	+0.5
2,422,087	-		PP_2123	0.30	+0.6
2,422,140	+		PP_2123	0.35	-0.8
2,422,140	+		PP_2123	0.35	+0.1
2,422,140	+		PP_2123	0.35	-0.5
2,422,141	-		PP_2123	0.35	-0.9
2,422,141	-		PP_2123	0.35	-0.3
2,422,337	+		PP_2123	0.51	+0.2
2,422,337	+		PP_2123	0.51	+0.1
2,422,337	+		PP_2123	0.51	-0.4
2,422,337	+		PP_2123	0.51	-0.8
2,422,337	+		PP_2123	0.51	-1.6
2,422,337	+		PP_2123	0.51	-1.6
2,422,338	-		PP_2123	0.51	+0.6
2,422,338	-		PP_2123	0.51	+0.5
2,422,461	+		PP_2123	0.61	+0.1
2,422,462	-		PP_2123	0.61	-1.4
2,422,508	+		PP_2123	0.65	+0.0
2,422,508	+		PP_2123	0.65	-0.8
2,422,673	+		PP_2123	0.78	-0.7