Strain Fitness in Pseudomonas putida KT2440 around PP_1066

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,219,029	+		PP_1064	0.50	+0.5
1,219,030	-		PP_1064	0.50	+0.9
1,219,252	-		PP_1064	0.69	-0.4
1,219,252	-		PP_1064	0.69	+0.4
1,219,296	-		PP_1064	0.73	+1.7
1,219,404	+		PP_1064	0.83	+0.5
1,219,404	+		PP_1064	0.83	+0.3
1,219,425	+		PP_1064	0.85	-0.9
1,219,554	-				-1.0
1,219,554	-				-0.9
1,219,720	+		PP_1065	0.30	-1.3
1,219,720	+		PP_1065	0.30	-3.2
1,219,720	+		PP_1065	0.30	+0.9
1,219,721	-		PP_1065	0.31	+0.1
1,219,721	-		PP_1065	0.31	-0.6
1,219,721	-		PP_1065	0.31	+0.7
1,219,721	-		PP_1065	0.31	+0.9
1,219,721	-		PP_1065	0.31	+0.2
1,219,721	-		PP_1065	0.31	+0.1
1,219,724	+		PP_1065	0.32	-0.4
1,219,724	+		PP_1065	0.32	-2.1
1,219,724	+		PP_1065	0.32	-1.6
1,219,724	+		PP_1065	0.32	+0.3
1,219,724	+		PP_1065	0.32	-1.5
1,219,725	-		PP_1065	0.32	-0.5
1,219,725	-		PP_1065	0.32	+1.1
1,219,725	-		PP_1065	0.32	-0.4
1,219,725	-		PP_1065	0.32	+0.2
1,219,823	+		PP_1065	0.61	-1.2
1,219,823	+		PP_1065	0.61	-0.3
1,219,824	-		PP_1065	0.61	-0.2
1,219,824	-		PP_1065	0.61	-1.3
1,219,824	-		PP_1065	0.61	+0.5
1,219,824	-		PP_1065	0.61	-0.7
1,219,874	+		PP_1065	0.76	-0.3
1,219,875	-		PP_1065	0.76	+0.6
1,219,875	-		PP_1065	0.76	-0.1
1,219,877	+		PP_1065	0.77	+0.2
1,219,877	+		PP_1065	0.77	+0.0
1,219,877	+		PP_1065	0.77	-0.9
1,219,878	-		PP_1065	0.77	-0.8
1,219,878	-		PP_1065	0.77	+0.7
1,219,878	-		PP_1065	0.77	-0.5
1,219,991	-				-0.8
1,220,185	+		PP_1066	0.16	+1.1
1,220,392	+		PP_1066	0.31	-0.3
1,220,392	+		PP_1066	0.31	-0.6
1,220,392	+		PP_1066	0.31	-2.3
1,220,955	+		PP_1066	0.74	+1.3
1,220,956	-		PP_1066	0.74	+0.5
1,221,014	+		PP_1066	0.78	+1.3
1,221,201	+				+1.5
1,221,218	+				-0.7
1,221,287	+				-0.2
1,221,546	+		PP_1067	0.13	+0.9
1,221,546	+		PP_1067	0.13	+0.1
1,221,546	+		PP_1067	0.13	-1.1
1,221,547	-		PP_1067	0.13	+0.5
1,221,579	-		PP_1067	0.15	-1.2
1,221,749	+		PP_1067	0.23	+0.6
1,221,907	+		PP_1067	0.32	-0.8
1,221,907	+		PP_1067	0.32	-2.3
1,221,907	+		PP_1067	0.32	+0.6
1,221,908	-		PP_1067	0.32	+0.2
1,221,908	-		PP_1067	0.32	-1.9
1,221,994	+		PP_1067	0.36	+0.3
1,221,994	+		PP_1067	0.36	+0.6
1,221,994	+		PP_1067	0.36	-0.3
1,221,994	+		PP_1067	0.36	-0.4