Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0652 and PP_0653 overlap by 4 nucleotides PP_0653 and PP_0654 are separated by 151 nucleotides
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
PP_0653: PP_0653 - conserved protein of unknown function, at 761,536 to 761,817
_0653
PP_0654: PP_0654 - putative malate dehydrogenase, at 761,969 to 762,901
_0654
Position (kb) 761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 760.920 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.091 kb on + strand, within PP_0652 at 761.092 kb on - strand, within PP_0652 at 761.145 kb on - strand, within PP_0652 at 761.398 kb on + strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.513 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.645 kb on - strand, within PP_0653 at 761.809 kb on + strand at 761.821 kb on + strand at 761.838 kb on + strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.944 kb on - strand at 761.944 kb on - strand at 762.140 kb on - strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.350 kb on + strand, within PP_0654 at 762.351 kb on - strand, within PP_0654 at 762.469 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.601 kb on + strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.744 kb on - strand, within PP_0654
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 760,920 + PP_0652 0.55 +1.7 760,968 + PP_0652 0.59 -0.6 760,968 + PP_0652 0.59 +0.2 760,968 + PP_0652 0.59 +0.1 760,969 - PP_0652 0.59 -0.2 761,037 - PP_0652 0.64 +0.9 761,081 + PP_0652 0.67 -0.7 761,081 + PP_0652 0.67 -1.7 761,081 + PP_0652 0.67 -0.8 761,081 + PP_0652 0.67 -0.2 761,081 + PP_0652 0.67 +0.5 761,081 + PP_0652 0.67 -0.3 761,081 + PP_0652 0.67 +0.1 761,082 - PP_0652 0.67 -0.7 761,082 - PP_0652 0.67 +0.9 761,082 - PP_0652 0.67 +0.7 761,085 + PP_0652 0.67 +1.3 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 +0.7 761,085 + PP_0652 0.67 +0.9 761,085 + PP_0652 0.67 +0.8 761,085 + PP_0652 0.67 +1.3 761,085 + PP_0652 0.67 +1.1 761,085 + PP_0652 0.67 -2.0 761,085 + PP_0652 0.67 +0.6 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 +0.9 761,086 - PP_0652 0.67 -0.7 761,086 - PP_0652 0.67 -1.0 761,086 - PP_0652 0.67 +2.8 761,086 - PP_0652 0.67 -0.1 761,086 - PP_0652 0.67 -1.4 761,086 - PP_0652 0.67 +0.1 761,086 - PP_0652 0.67 +0.6 761,086 - PP_0652 0.67 -1.8 761,086 - PP_0652 0.67 +0.4 761,086 - PP_0652 0.67 +1.2 761,091 + PP_0652 0.68 +1.4 761,092 - PP_0652 0.68 +1.6 761,145 - PP_0652 0.72 -1.3 761,398 + PP_0652 0.90 +0.5 761,399 - PP_0652 0.90 -0.1 761,399 - PP_0652 0.90 -0.0 761,399 - PP_0652 0.90 -3.0 761,513 + +0.2 761,516 + +0.1 761,516 + -0.7 761,516 + +0.3 761,516 + -0.1 761,516 + -0.4 761,516 + +0.8 761,516 + -0.5 761,517 - -1.4 761,517 - -0.2 761,517 - -2.0 761,517 - -0.1 761,517 - -1.8 761,522 + +0.2 761,522 + +0.6 761,522 + -0.0 761,522 + +0.1 761,522 + -0.6 761,522 + +0.4 761,522 + +0.6 761,522 + -0.7 761,522 + -2.1 761,522 + +0.9 761,522 + -0.1 761,522 + -0.1 761,522 + +1.0 761,523 - +0.1 761,523 - -0.2 761,523 - -1.1 761,523 - +0.5 761,523 - +0.0 761,523 - -2.5 761,523 - +0.5 761,523 - +1.1 761,523 - -2.9 761,523 - -0.0 761,523 - -0.7 761,523 - +0.5 761,523 - -0.8 761,523 - +0.6 761,524 + +0.1 761,524 + -1.0 761,524 + -2.2 761,524 + -1.1 761,525 - -0.8 761,525 - -0.6 761,525 - +0.1 761,525 - +1.0 761,525 - +0.3 761,525 - -0.2 761,528 + +1.6 761,528 + +0.8 761,528 + +1.0 761,528 + +0.4 761,528 + -1.0 761,528 + -0.1 761,528 + -1.2 761,529 - +0.7 761,529 - -1.0 761,529 - -0.7 761,529 - +1.0 761,529 - -0.1 761,645 - PP_0653 0.39 -0.9 761,809 + -0.5 761,821 + -0.0 761,838 + +0.8 761,916 - +0.2 761,916 - -1.9 761,916 - -0.8 761,916 - -0.0 761,916 - -1.2 761,916 - +0.2 761,926 - -2.1 761,926 - -0.4 761,926 - +0.1 761,928 - +0.3 761,928 - -0.9 761,928 - +0.0 761,944 - +0.6 761,944 - +0.1 762,140 - PP_0654 0.18 +0.6 762,243 + PP_0654 0.29 -0.4 762,243 + PP_0654 0.29 -1.3 762,243 + PP_0654 0.29 +0.4 762,243 + PP_0654 0.29 -0.4 762,243 + PP_0654 0.29 +0.5 762,244 - PP_0654 0.29 -0.3 762,244 - PP_0654 0.29 -1.8 762,244 - PP_0654 0.29 -0.6 762,244 - PP_0654 0.29 -1.3 762,244 - PP_0654 0.29 +0.1 762,244 - PP_0654 0.29 +0.6 762,244 - PP_0654 0.29 +0.6 762,250 + PP_0654 0.30 -1.1 762,250 + PP_0654 0.30 -1.1 762,251 - PP_0654 0.30 -0.5 762,251 - PP_0654 0.30 +0.5 762,350 + PP_0654 0.41 -0.4 762,351 - PP_0654 0.41 +0.8 762,469 + PP_0654 0.54 +0.0 762,524 + PP_0654 0.59 +1.0 762,524 + PP_0654 0.59 -1.9 762,524 + PP_0654 0.59 -0.9 762,601 + PP_0654 0.68 -0.4 762,710 - PP_0654 0.79 -0.7 762,710 - PP_0654 0.79 +0.1 762,744 - PP_0654 0.83 +0.3
Or see this region's nucleotide sequence