Strain Fitness in Pseudomonas putida KT2440 around PP_0164

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0163 and PP_0164 are separated by 272 nucleotidesPP_0164 and PP_0165 are separated by 10 nucleotides PP_0163: PP_0163 - putative transcriptional regulator, at 186,227 to 186,916 _0163 PP_0164: PP_0164 - conserved protein of unknown function, at 187,189 to 187,881 _0164 PP_0165: PP_0165 - GGDEF domain protein, at 187,892 to 189,838 _0165 Position (kb) 187 188Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 186.205 kb on - strandat 186.220 kb on + strandat 186.229 kb on - strandat 186.252 kb on + strandat 186.253 kb on - strandat 186.338 kb on + strand, within PP_0163at 186.338 kb on + strand, within PP_0163at 186.339 kb on - strand, within PP_0163at 186.446 kb on + strand, within PP_0163at 186.446 kb on + strand, within PP_0163at 186.447 kb on - strand, within PP_0163at 186.447 kb on - strand, within PP_0163at 186.471 kb on + strand, within PP_0163at 186.472 kb on - strand, within PP_0163at 186.472 kb on - strand, within PP_0163at 186.545 kb on - strand, within PP_0163at 186.545 kb on - strand, within PP_0163at 186.547 kb on - strand, within PP_0163at 186.547 kb on - strand, within PP_0163at 186.620 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.633 kb on + strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.634 kb on - strand, within PP_0163at 186.759 kb on + strand, within PP_0163at 186.759 kb on + strand, within PP_0163at 186.794 kb on - strand, within PP_0163at 186.942 kb on + strandat 186.942 kb on + strandat 186.960 kb on + strandat 186.960 kb on + strandat 186.961 kb on - strandat 186.961 kb on - strandat 186.963 kb on + strandat 186.963 kb on + strandat 186.964 kb on - strandat 186.964 kb on - strandat 187.026 kb on - strandat 187.026 kb on - strandat 187.026 kb on - strandat 187.061 kb on + strandat 187.217 kb on + strandat 187.217 kb on + strandat 187.225 kb on + strandat 187.225 kb on + strandat 187.226 kb on - strandat 187.226 kb on - strandat 187.331 kb on + strand, within PP_0164at 187.331 kb on + strand, within PP_0164at 187.331 kb on + strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.448 kb on - strand, within PP_0164at 187.484 kb on - strand, within PP_0164at 187.484 kb on - strand, within PP_0164at 187.552 kb on + strand, within PP_0164at 187.603 kb on + strand, within PP_0164at 187.603 kb on + strand, within PP_0164at 187.648 kb on + strand, within PP_0164at 187.649 kb on - strand, within PP_0164at 187.651 kb on + strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.741 kb on + strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.804 kb on - strand, within PP_0164at 187.876 kb on + strandat 187.991 kb on + strandat 187.991 kb on + strandat 187.992 kb on - strandat 187.992 kb on - strandat 187.992 kb on - strandat 188.114 kb on + strand, within PP_0165at 188.114 kb on + strand, within PP_0165at 188.115 kb on - strand, within PP_0165at 188.115 kb on - strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.118 kb on - strand, within PP_0165at 188.426 kb on + strand, within PP_0165at 188.427 kb on - strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.449 kb on + strand, within PP_0165at 188.449 kb on + strand, within PP_0165at 188.502 kb on + strand, within PP_0165at 188.511 kb on + strand, within PP_0165at 188.511 kb on + strand, within PP_0165at 188.512 kb on - strand, within PP_0165at 188.636 kb on + strand, within PP_0165at 188.637 kb on - strand, within PP_0165at 188.664 kb on + strand, within PP_0165at 188.694 kb on - strand, within PP_0165at 188.755 kb on + strand, within PP_0165at 188.778 kb on + strand, within PP_0165at 188.779 kb on - strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.798 kb on - strand, within PP_0165

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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186,205 - +1.0
186,220 + +0.6
186,229 - +0.0
186,252 + -0.7
186,253 - -1.5
186,338 + PP_0163 0.16 -3.9
186,338 + PP_0163 0.16 +0.5
186,339 - PP_0163 0.16 -0.4
186,446 + PP_0163 0.32 +0.4
186,446 + PP_0163 0.32 -0.1
186,447 - PP_0163 0.32 +0.2
186,447 - PP_0163 0.32 +0.3
186,471 + PP_0163 0.35 -0.3
186,472 - PP_0163 0.36 +0.3
186,472 - PP_0163 0.36 -1.5
186,545 - PP_0163 0.46 -0.7
186,545 - PP_0163 0.46 +0.7
186,547 - PP_0163 0.46 +0.7
186,547 - PP_0163 0.46 +1.3
186,620 + PP_0163 0.57 -0.9
186,633 + PP_0163 0.59 -0.5
186,633 + PP_0163 0.59 -0.8
186,633 + PP_0163 0.59 -0.3
186,633 + PP_0163 0.59 -0.4
186,633 + PP_0163 0.59 +0.5
186,633 + PP_0163 0.59 -1.4
186,633 + PP_0163 0.59 -0.2
186,634 - PP_0163 0.59 -4.3
186,634 - PP_0163 0.59 +0.5
186,634 - PP_0163 0.59 -0.2
186,634 - PP_0163 0.59 -0.2
186,634 - PP_0163 0.59 +0.4
186,634 - PP_0163 0.59 +0.3
186,759 + PP_0163 0.77 -0.3
186,759 + PP_0163 0.77 -0.1
186,794 - PP_0163 0.82 -0.1
186,942 + -0.1
186,942 + +0.4
186,960 + -0.9
186,960 + -1.1
186,961 - +0.7
186,961 - +0.8
186,963 + +0.6
186,963 + +0.1
186,964 - +1.3
186,964 - +0.9
187,026 - +1.5
187,026 - +0.2
187,026 - +0.6
187,061 + -0.2
187,217 + -1.1
187,217 + +0.6
187,225 + -0.1
187,225 + +0.1
187,226 - -0.9
187,226 - -0.7
187,331 + PP_0164 0.20 +0.3
187,331 + PP_0164 0.20 -2.0
187,331 + PP_0164 0.20 -2.7
187,332 - PP_0164 0.21 -3.2
187,332 - PP_0164 0.21 -2.7
187,332 - PP_0164 0.21 -2.9
187,332 - PP_0164 0.21 -1.1
187,332 - PP_0164 0.21 -0.7
187,448 - PP_0164 0.37 -1.4
187,484 - PP_0164 0.43 -2.5
187,484 - PP_0164 0.43 -3.3
187,552 + PP_0164 0.52 -0.9
187,603 + PP_0164 0.60 -0.1
187,603 + PP_0164 0.60 -0.5
187,648 + PP_0164 0.66 -2.4
187,649 - PP_0164 0.66 -1.8
187,651 + PP_0164 0.67 +0.1
187,652 - PP_0164 0.67 -1.6
187,652 - PP_0164 0.67 -1.0
187,652 - PP_0164 0.67 -1.7
187,652 - PP_0164 0.67 -0.3
187,741 + PP_0164 0.80 -0.5
187,742 - PP_0164 0.80 -3.7
187,742 - PP_0164 0.80 -1.4
187,742 - PP_0164 0.80 -3.0
187,804 - PP_0164 0.89 -1.0
187,876 + +0.3
187,991 + -0.2
187,991 + +0.9
187,992 - -0.6
187,992 - +0.9
187,992 - +1.3
188,114 + PP_0165 0.11 -0.1
188,114 + PP_0165 0.11 -1.0
188,115 - PP_0165 0.11 -0.2
188,115 - PP_0165 0.11 +0.8
188,117 + PP_0165 0.12 +1.1
188,117 + PP_0165 0.12 -0.1
188,117 + PP_0165 0.12 -1.8
188,118 - PP_0165 0.12 +0.2
188,426 + PP_0165 0.27 -1.7
188,427 - PP_0165 0.27 +0.1
188,433 + PP_0165 0.28 +0.2
188,433 + PP_0165 0.28 -0.3
188,433 + PP_0165 0.28 +0.2
188,434 - PP_0165 0.28 +0.5
188,434 - PP_0165 0.28 +0.4
188,434 - PP_0165 0.28 -1.3
188,449 + PP_0165 0.29 +0.4
188,449 + PP_0165 0.29 -0.3
188,502 + PP_0165 0.31 +0.2
188,511 + PP_0165 0.32 -0.7
188,511 + PP_0165 0.32 -0.2
188,512 - PP_0165 0.32 -0.9
188,636 + PP_0165 0.38 +0.3
188,637 - PP_0165 0.38 +0.7
188,664 + PP_0165 0.40 +0.5
188,694 - PP_0165 0.41 +0.6
188,755 + PP_0165 0.44 -0.6
188,778 + PP_0165 0.46 +0.5
188,779 - PP_0165 0.46 +0.8
188,797 + PP_0165 0.46 -0.0
188,797 + PP_0165 0.46 -0.3
188,797 + PP_0165 0.46 +0.2
188,797 + PP_0165 0.46 -0.1
188,798 - PP_0165 0.47 +0.8

Or see this region's nucleotide sequence