Strain Fitness in Pseudomonas putida KT2440 around PP_5597

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,702,621	+				+0.4
3,702,621	+				-0.7
3,702,686	+				+0.8
3,702,750	+				+0.1
3,702,750	+				-0.4
3,702,751	-				+0.1
3,702,751	-				+0.0
3,702,751	-				-0.0
3,702,863	-		PP_3269	0.42	+0.5
3,703,042	+				-0.1
3,703,042	+				+0.7
3,703,042	+				-0.7
3,703,043	-				-0.0
3,703,043	-				+0.1
3,703,043	-				-0.3
3,703,182	+				+2.2
3,703,182	+				+1.1
3,703,182	+				-0.2
3,703,195	+				+0.6
3,703,195	+				+0.6
3,703,195	+				-0.2
3,703,196	-				+0.3
3,703,196	-				+1.7
3,703,196	-				+0.4
3,703,196	-				-0.5
3,703,208	-		PP_5596	0.11	+0.4
3,703,507	-				-0.6
3,703,507	-				-0.7
3,703,520	+				-1.3
3,703,521	-				-0.1
3,703,521	-				+0.3
3,703,521	-				-0.3
3,703,521	-				-0.4
3,703,590	+		PP_5597	0.38	+0.3
3,703,590	+		PP_5597	0.38	-0.2
3,703,591	-		PP_5597	0.39	+1.2
3,703,720	+				+1.0
3,703,720	+				+0.4
3,703,720	+				+0.0
3,703,728	-				-0.3
3,703,728	-				+1.0
3,703,818	+				-1.0
3,703,818	+				-1.2
3,703,818	+				+1.1
3,703,818	+				-0.4
3,703,819	-				-0.7
3,703,819	-				+0.5
3,703,850	+				-0.2
3,703,880	+				+0.1
3,703,941	+				-0.6
3,703,941	+				+0.1
3,703,941	+				-0.2
3,703,941	+				+0.5
3,703,942	-				+0.6
3,703,942	-				+0.1
3,703,984	+				-0.1
3,703,984	+				+0.5
3,703,984	+				-0.7
3,703,985	-				-0.9
3,703,985	-				-0.0
3,704,161	+		PP_3270	0.10	+0.2
3,704,161	+		PP_3270	0.10	+0.6
3,704,162	-		PP_3270	0.10	+0.5
3,704,162	-		PP_3270	0.10	-1.3
3,704,220	+				-0.7
3,704,221	-		PP_3270	0.13	-2.9
3,704,228	-		PP_3270	0.14	+1.5
3,704,247	-		PP_3270	0.15	+0.6
3,704,393	-		PP_3270	0.22	-0.2
3,704,410	-		PP_3270	0.23	-0.1
3,704,443	+		PP_3270	0.24	-1.0
3,704,443	+		PP_3270	0.24	+0.1
3,704,484	+		PP_3270	0.26	-0.9
3,704,485	-		PP_3270	0.26	-0.3
3,704,503	+		PP_3270	0.27	-0.3