Strain Fitness in Pseudomonas putida KT2440 around PP_5344

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
6,091,233	+		PP_5342	0.83	+1.1
6,091,233	+		PP_5342	0.83	-0.7
6,091,233	+		PP_5342	0.83	-1.3
6,091,234	-		PP_5342	0.83	-0.1
6,091,234	-		PP_5342	0.83	-0.4
6,091,275	+		PP_5342	0.86	-0.2
6,091,276	-		PP_5342	0.86	-0.7
6,091,276	-		PP_5342	0.86	+0.2
6,091,358	-				+0.5
6,091,404	+				+1.0
6,091,404	+				-0.0
6,091,405	-				+0.1
6,091,406	+				-0.0
6,091,406	+				-0.4
6,091,406	+				-0.2
6,091,406	+				+0.3
6,091,406	+				-0.1
6,091,406	+				-0.7
6,091,407	-				-0.7
6,091,466	+				-0.0
6,091,466	+				-0.4
6,091,467	-				-0.1
6,091,467	-				-0.3
6,091,489	+				-0.4
6,091,489	+				-0.8
6,091,514	-				-0.9
6,091,523	+				+0.1
6,091,523	+				-0.0
6,091,523	+				-2.3
6,091,545	+				-1.5
6,091,545	+				+0.2
6,091,546	-				+0.0
6,091,546	-				-0.5
6,091,579	+				-0.9
6,091,579	+				-0.7
6,091,579	+				+0.8
6,091,579	+				-0.8
6,091,580	-				-0.5
6,091,580	-				+0.1
6,091,580	-				-0.1
6,091,580	-				-0.9
6,091,580	-				-0.3
6,091,580	-				-0.1
6,091,580	-				-0.2
6,091,580	-				-0.1
6,091,587	+				-1.4
6,091,587	+				-0.6
6,091,588	-				-0.1
6,091,588	-				+0.5
6,091,588	-				-0.2
6,091,588	-				-2.6
6,091,634	+				-1.9
6,091,634	+				+0.9
6,091,634	+				-0.7
6,091,634	+				+1.1
6,091,634	+				-0.1
6,091,635	-				+0.1
6,091,635	-				+0.2
6,091,635	-				+0.7
6,091,635	-				+0.3
6,091,635	-				+0.5
6,091,738	+		PP_5343	0.26	-0.1
6,091,738	+		PP_5343	0.26	-0.4
6,091,739	-		PP_5343	0.26	+0.4
6,091,739	-		PP_5343	0.26	+0.1
6,091,739	-		PP_5343	0.26	-0.2
6,091,739	-		PP_5343	0.26	-1.0
6,091,739	-		PP_5343	0.26	-0.1
6,091,739	-		PP_5343	0.26	+1.4
6,091,806	-		PP_5343	0.37	+0.1
6,091,825	+		PP_5343	0.40	-1.1
6,091,825	+		PP_5343	0.40	+0.4
6,091,825	+		PP_5343	0.40	-0.6
6,091,826	-		PP_5343	0.40	+0.0
6,091,840	+		PP_5343	0.42	-0.2
6,091,841	-		PP_5343	0.42	-0.2
6,091,841	-		PP_5343	0.42	-0.1
6,091,843	+		PP_5343	0.42	-0.1
6,091,844	-		PP_5343	0.43	-0.8
6,091,889	-		PP_5343	0.50	+0.5
6,091,906	+		PP_5343	0.52	+0.1
6,091,906	+		PP_5343	0.52	-0.6
6,091,907	-		PP_5343	0.53	+0.3
6,091,907	-		PP_5343	0.53	+0.1
6,091,924	-		PP_5343	0.55	-0.9
6,091,924	-		PP_5343	0.55	+0.2
6,092,027	-		PP_5343	0.72	+0.2
6,092,211	+				+1.1
6,092,212	-				-0.0
6,092,228	+				+1.4
6,092,228	+				-1.1
6,092,228	+				-1.7
6,092,229	-				+0.4
6,092,286	+		PP_5344	0.15	-0.2
6,092,286	+		PP_5344	0.15	-0.1
6,092,286	+		PP_5344	0.15	-0.2
6,092,286	+		PP_5344	0.15	+0.9
6,092,287	-		PP_5344	0.16	+0.8
6,092,299	-		PP_5344	0.18	+0.0
6,092,424	+		PP_5344	0.46	+1.1
6,092,424	+		PP_5344	0.46	+1.4
6,092,424	+		PP_5344	0.46	-0.4
6,092,425	-		PP_5344	0.47	+1.4
6,092,425	-		PP_5344	0.47	-1.2
6,092,460	+		PP_5344	0.54	+1.0
6,092,461	-		PP_5344	0.55	+1.0
6,092,475	+		PP_5344	0.58	+1.3
6,092,475	+		PP_5344	0.58	+0.0
6,092,475	+		PP_5344	0.58	-0.0
6,092,475	+		PP_5344	0.58	+0.3
6,092,475	+		PP_5344	0.58	+0.8
6,092,475	+		PP_5344	0.58	+0.7
6,092,476	-		PP_5344	0.58	-0.4
6,092,476	-		PP_5344	0.58	+0.4
6,092,476	-		PP_5344	0.58	+0.7
6,092,476	-		PP_5344	0.58	+0.2
6,092,476	-		PP_5344	0.58	-0.1
6,092,476	-		PP_5344	0.58	-0.3
6,092,476	-		PP_5344	0.58	+0.2
6,092,476	-		PP_5344	0.58	+1.6
6,092,476	-		PP_5344	0.58	-0.0
6,092,532	+		PP_5344	0.70	-0.7
6,092,532	+		PP_5344	0.70	-0.7
6,092,532	+		PP_5344	0.70	+1.1
6,092,532	+		PP_5344	0.70	+0.4
6,092,533	-		PP_5344	0.71	-0.4
6,092,533	-		PP_5344	0.71	+0.7
6,092,533	-		PP_5344	0.71	+0.1
6,092,662	-				-0.2
6,092,662	-				-1.5
6,092,662	-				+0.3
6,092,662	-				-0.3
6,092,827	+		PP_5345	0.23	-1.0
6,092,827	+		PP_5345	0.23	+0.3
6,092,827	+		PP_5345	0.23	+0.5
6,092,827	+		PP_5345	0.23	+0.7
6,092,912	-		PP_5345	0.36	-0.4
6,093,055	+		PP_5345	0.57	+0.4
6,093,056	-		PP_5345	0.57	+0.0
6,093,056	-		PP_5345	0.57	+0.2
6,093,205	-		PP_5345	0.79	+0.3
6,093,213	+		PP_5345	0.81	-0.3
6,093,364	+				+0.2
6,093,365	-				+0.4
6,093,365	-				+0.9
6,093,365	-				-0.2
6,093,446	+				+0.9
6,093,446	+				-1.0
6,093,447	-				-0.2
6,093,459	-				+2.1
6,093,537	-				+0.6