Strain Fitness in Pseudomonas putida KT2440 around PP_4444

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
5,038,473	+				+0.3
5,038,473	+				+0.3
5,038,473	+				-0.5
5,038,473	+				+1.0
5,038,548	+		PP_4444	0.36	-0.2
5,038,548	+		PP_4444	0.36	+2.2
5,038,549	-		PP_4444	0.37	+0.6
5,038,566	+		PP_4444	0.44	+0.1
5,038,567	-		PP_4444	0.44	+1.1
5,038,567	-		PP_4444	0.44	+0.6
5,038,567	-		PP_4444	0.44	+0.7
5,038,669	+		PP_4444	0.84	-0.3
5,038,687	-				+0.7
5,038,687	-				+0.5
5,038,712	+				-1.9
5,038,712	+				-1.1
5,038,713	-				+0.6
5,038,713	-				+0.8
5,038,713	-				+0.3
5,038,742	+				+0.1
5,038,743	-				-0.4
5,038,790	+		PP_4445	0.12	-1.2
5,038,793	+		PP_4445	0.12	+1.0
5,038,794	-		PP_4445	0.12	-0.1
5,038,794	-		PP_4445	0.12	-0.4
5,038,794	-		PP_4445	0.12	+0.4
5,038,794	-		PP_4445	0.12	+0.3
5,038,794	-		PP_4445	0.12	-0.1
5,038,872	+		PP_4445	0.23	+0.4
5,038,873	-		PP_4445	0.23	-0.3
5,038,889	+		PP_4445	0.25	-0.3
5,038,997	+		PP_4445	0.39	-0.0
5,039,019	-		PP_4445	0.42	+0.1
5,039,019	-		PP_4445	0.42	+0.4
5,039,111	+		PP_4445	0.54	-0.2
5,039,111	+		PP_4445	0.54	+0.7
5,039,112	-		PP_4445	0.54	+0.8
5,039,112	-		PP_4445	0.54	+0.4
5,039,112	-		PP_4445	0.54	+0.4
5,039,112	-		PP_4445	0.54	+0.6
5,039,112	-		PP_4445	0.54	+1.0
5,039,112	-		PP_4445	0.54	-0.5
5,039,123	+		PP_4445	0.56	-0.3
5,039,124	-		PP_4445	0.56	+0.5
5,039,124	-		PP_4445	0.56	-1.0
5,039,124	-		PP_4445	0.56	-2.1
5,039,124	-		PP_4445	0.56	-0.7
5,039,138	+		PP_4445	0.58	-0.1
5,039,139	-				+1.0
5,039,302	+		PP_4445	0.79	-0.4
5,039,302	+		PP_4445	0.79	+0.2
5,039,345	+		PP_4445	0.85	-2.9
5,039,372	-		PP_4445	0.89	+0.8
5,039,372	-		PP_4445	0.89	+0.8
5,039,408	+				+0.4
5,039,456	+				-1.2
5,039,456	+				-0.0
5,039,456	+				+0.2
5,039,457	-				+0.8
5,039,457	-				+0.5
5,039,460	+				-0.7
5,039,460	+				+0.1
5,039,461	-				-0.5
5,039,461	-				-0.0
5,039,461	-				-0.2
5,039,461	-				-0.6
5,039,461	-				-1.8
5,039,461	-				+0.3
5,039,461	-				+0.5
5,039,464	+				-0.5
5,039,464	+				-0.8
5,039,464	+				-0.6
5,039,464	+				+0.4
5,039,464	+				+0.5
5,039,465	-				-0.3
5,039,465	-				-0.3
5,039,485	+				-0.3
5,039,485	+				+0.4
5,039,507	+		PP_4446	0.11	-0.0
5,039,508	-		PP_4446	0.11	+0.0
5,039,611	+		PP_4446	0.20	-0.9