Strain Fitness in Pseudomonas putida KT2440 around PP_4391

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,982,149	+		PP_4389	0.24	+0.1
4,982,149	+		PP_4389	0.24	+1.6
4,982,149	+		PP_4389	0.24	+1.7
4,982,149	+		PP_4389	0.24	+0.6
4,982,150	-		PP_4389	0.24	+0.9
4,982,150	-		PP_4389	0.24	-0.4
4,982,198	+		PP_4389	0.31	+0.7
4,982,199	-		PP_4389	0.31	-0.5
4,982,199	-		PP_4389	0.31	+0.5
4,982,266	+		PP_4389	0.41	+0.6
4,982,267	-		PP_4389	0.41	+0.9
4,982,428	+		PP_4389	0.64	+1.3
4,982,428	+		PP_4389	0.64	+0.8
4,982,429	-		PP_4389	0.64	+0.2
4,982,641	+				+0.0
4,982,642	-				+0.1
4,982,642	-				+0.8
4,982,642	-				+0.7
4,982,661	-				+0.4
4,982,692	+				+0.3
4,982,692	+				+0.7
4,982,692	+				+1.0
4,982,692	+				+0.2
4,982,692	+				+0.7
4,982,693	-				-1.1
4,982,693	-				-0.2
4,982,821	+		PP_4390	0.29	+0.7
4,982,822	-		PP_4390	0.29	+0.6
4,982,825	-		PP_4390	0.30	+0.6
4,982,830	+		PP_4390	0.31	+0.5
4,982,830	+		PP_4390	0.31	+0.9
4,982,830	+		PP_4390	0.31	+1.2
4,982,831	-		PP_4390	0.31	+0.6
4,982,867	-		PP_4390	0.39	-0.1
4,982,907	+		PP_4390	0.48	+1.0
4,982,907	+		PP_4390	0.48	+1.0
4,982,907	+		PP_4390	0.48	-0.0
4,982,907	+		PP_4390	0.48	+0.0
4,982,908	-				+1.6
4,983,013	+		PP_4390	0.72	+1.1
4,983,014	-		PP_4390	0.72	+0.7
4,983,178	+				+0.0
4,983,228	+		PP_4391	0.21	-0.1
4,983,229	-		PP_4391	0.22	+0.0
4,983,229	-		PP_4391	0.22	+0.8
4,983,294	+		PP_4391	0.37	+0.4
4,983,295	-		PP_4391	0.38	+0.4
4,983,295	-		PP_4391	0.38	+0.7
4,983,438	+		PP_4391	0.73	-0.2
4,983,438	+		PP_4391	0.73	+1.4
4,983,438	+		PP_4391	0.73	+0.6
4,983,439	-		PP_4391	0.73	+0.8
4,983,439	-		PP_4391	0.73	+0.7
4,983,599	-				-0.0
4,983,599	-				-0.4
4,983,631	+				-0.3
4,983,828	-				+0.8
4,983,833	+				-0.2
4,983,833	+				-1.0
4,983,833	+				-0.6
4,983,833	+				+0.9
4,983,834	-				+0.1
4,983,834	-				+0.3
4,983,834	-				+0.5
4,983,873	+				-0.8
4,983,874	-				-0.3
4,983,874	-				-0.5
4,983,874	-				+0.3
4,983,874	-				+1.0
4,983,885	+				-1.3
4,983,885	+				+0.7
4,983,886	-				+0.9
4,983,966	+		PP_4392	0.11	-1.2
4,983,967	-		PP_4392	0.11	+0.3
4,983,967	-		PP_4392	0.11	-0.5
4,984,032	+		PP_4392	0.19	-2.1
4,984,032	+		PP_4392	0.19	-0.8
4,984,083	+		PP_4392	0.25	-1.2
4,984,083	+		PP_4392	0.25	-1.3
4,984,084	-		PP_4392	0.26	+0.0
4,984,084	-		PP_4392	0.26	-0.9
4,984,084	-		PP_4392	0.26	+0.1
4,984,084	-		PP_4392	0.26	-1.0
4,984,084	-		PP_4392	0.26	-1.0
4,984,174	-		PP_4392	0.36	-0.3
4,984,455	+		PP_4392	0.70	-0.7
4,984,456	-		PP_4392	0.71	-0.1