Strain Fitness in Pseudomonas putida KT2440 around PP_4388

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,979,914	+		PP_4386	0.60	+0.6
4,979,914	+		PP_4386	0.60	+0.7
4,979,914	+		PP_4386	0.60	+0.7
4,979,914	+		PP_4386	0.60	-0.2
4,979,914	+		PP_4386	0.60	+0.6
4,979,914	+		PP_4386	0.60	+1.0
4,979,915	-		PP_4386	0.60	+0.5
4,979,915	-		PP_4386	0.60	+1.0
4,979,915	-		PP_4386	0.60	+0.4
4,980,193	+				+0.3
4,980,193	+				-0.4
4,980,194	-				+0.0
4,980,227	+				+1.6
4,980,321	+				+0.2
4,980,398	+		PP_4387	0.15	+0.1
4,980,398	+		PP_4387	0.15	-0.9
4,980,482	+		PP_4387	0.58	-1.7
4,980,482	+		PP_4387	0.58	+0.6
4,980,544	+				-0.6
4,980,603	+				-0.0
4,980,603	+				+0.6
4,980,621	+				+0.0
4,980,622	-				-0.4
4,980,622	-				+0.7
4,980,696	+				+0.1
4,980,697	-				+0.7
4,980,697	-				+0.5
4,980,723	-				+0.3
4,980,723	-				+1.0
4,980,723	-				+0.9
4,980,828	+		PP_4388	0.15	+0.3
4,980,828	+		PP_4388	0.15	+0.2
4,980,828	+		PP_4388	0.15	+0.3
4,980,828	+		PP_4388	0.15	+1.4
4,980,829	-		PP_4388	0.15	+1.3
4,980,829	-		PP_4388	0.15	+1.3
4,980,945	+		PP_4388	0.24	+1.7
4,981,032	+		PP_4388	0.30	+0.7
4,981,032	+		PP_4388	0.30	+0.6
4,981,032	+		PP_4388	0.30	+0.9
4,981,032	+		PP_4388	0.30	+1.3
4,981,032	+		PP_4388	0.30	-0.7
4,981,032	+		PP_4388	0.30	-0.3
4,981,033	-		PP_4388	0.31	+0.2
4,981,033	-		PP_4388	0.31	+0.4
4,981,033	-		PP_4388	0.31	+0.5
4,981,216	+		PP_4388	0.44	+0.0
4,981,217	-		PP_4388	0.44	+1.2
4,981,292	-		PP_4388	0.50	+0.3
4,981,312	+		PP_4388	0.52	+0.4
4,981,312	+		PP_4388	0.52	+1.7
4,981,312	+		PP_4388	0.52	+0.7
4,981,313	-		PP_4388	0.52	+1.5
4,981,338	+		PP_4388	0.54	+0.4
4,981,361	-		PP_4388	0.55	+0.3
4,981,384	+		PP_4388	0.57	+0.6
4,981,401	+		PP_4388	0.58	+0.5
4,981,401	+		PP_4388	0.58	+0.8
4,981,402	-		PP_4388	0.58	+0.2
4,981,402	-		PP_4388	0.58	+0.9
4,981,402	-		PP_4388	0.58	+1.1
4,981,402	-		PP_4388	0.58	-0.9
4,981,402	-		PP_4388	0.58	+1.2
4,981,513	+		PP_4388	0.67	+0.5
4,981,514	-		PP_4388	0.67	+1.2
4,981,514	-				-0.3
4,981,572	+		PP_4388	0.71	+0.4
4,981,609	-		PP_4388	0.74	-0.1
4,981,609	-		PP_4388	0.74	+0.9
4,981,609	-		PP_4388	0.74	+0.7
4,981,647	+		PP_4388	0.77	+1.0
4,981,647	+				+0.1
4,981,647	+		PP_4388	0.77	+1.3
4,981,729	+		PP_4388	0.83	+1.3
4,981,729	+		PP_4388	0.83	+1.4
4,981,729	+		PP_4388	0.83	+0.3
4,981,730	-		PP_4388	0.83	+0.7
4,981,824	+				-1.2
4,981,825	-				+1.2
4,981,920	+				+0.6
4,981,920	+				+1.0
4,981,921	-				+0.1
4,981,921	-				+0.6
4,981,955	+				+0.6
4,981,955	+				+1.1
4,981,956	-				+1.2
4,981,956	-				+0.6
4,981,982	-				+0.9
4,982,060	+		PP_4389	0.11	+0.6
4,982,149	+		PP_4389	0.24	+0.1
4,982,149	+		PP_4389	0.24	+1.6
4,982,149	+		PP_4389	0.24	+1.7
4,982,149	+		PP_4389	0.24	+0.6
4,982,150	-		PP_4389	0.24	+0.9
4,982,150	-		PP_4389	0.24	-0.4
4,982,198	+		PP_4389	0.31	+0.7
4,982,199	-		PP_4389	0.31	-0.5
4,982,199	-		PP_4389	0.31	+0.5
4,982,266	+		PP_4389	0.41	+0.6
4,982,267	-		PP_4389	0.41	+0.9
4,982,428	+		PP_4389	0.64	+1.3
4,982,428	+		PP_4389	0.64	+0.8
4,982,429	-		PP_4389	0.64	+0.2
4,982,641	+				+0.0
4,982,642	-				+0.1
4,982,642	-				+0.8
4,982,642	-				+0.7
4,982,661	-				+0.4
4,982,692	+				+0.3
4,982,692	+				+0.7
4,982,692	+				+1.0
4,982,692	+				+0.2
4,982,692	+				+0.7
4,982,693	-				-1.1
4,982,693	-				-0.2
4,982,821	+		PP_4390	0.29	+0.7
4,982,822	-		PP_4390	0.29	+0.6
4,982,825	-		PP_4390	0.30	+0.6
4,982,830	+		PP_4390	0.31	+0.5
4,982,830	+		PP_4390	0.31	+0.9
4,982,830	+		PP_4390	0.31	+1.2
4,982,831	-		PP_4390	0.31	+0.6
4,982,867	-		PP_4390	0.39	-0.1
4,982,907	+		PP_4390	0.48	+1.0
4,982,907	+		PP_4390	0.48	+1.0
4,982,907	+		PP_4390	0.48	-0.0
4,982,907	+		PP_4390	0.48	+0.0
4,982,908	-				+1.6