Strain Fitness in Pseudomonas putida KT2440 around PP_4353

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,945,607	+		PP_4352	0.15	+1.1
4,945,607	+		PP_4352	0.15	+0.7
4,945,607	+		PP_4352	0.15	+0.6
4,945,607	+		PP_4352	0.15	+0.4
4,945,607	+		PP_4352	0.15	+0.7
4,945,607	+		PP_4352	0.15	-0.2
4,945,607	+		PP_4352	0.15	+0.8
4,945,608	-		PP_4352	0.15	+0.7
4,945,608	-		PP_4352	0.15	-0.1
4,945,608	-		PP_4352	0.15	+0.6
4,945,608	-		PP_4352	0.15	+1.0
4,945,608	-		PP_4352	0.15	+0.6
4,945,608	-		PP_4352	0.15	+0.1
4,945,742	+		PP_4352	0.27	+1.0
4,945,743	-		PP_4352	0.27	+0.4
4,945,743	-		PP_4352	0.27	+0.8
4,945,761	-		PP_4352	0.28	+1.3
4,945,761	-		PP_4352	0.28	+0.6
4,945,761	-		PP_4352	0.28	+1.1
4,945,849	-		PP_4352	0.36	+1.1
4,945,886	+		PP_4352	0.39	+0.8
4,945,886	+		PP_4352	0.39	+1.0
4,945,886	+		PP_4352	0.39	+0.5
4,946,022	+		PP_4352	0.51	+0.5
4,946,022	+		PP_4352	0.51	-0.1
4,946,022	+		PP_4352	0.51	+0.5
4,946,023	-		PP_4352	0.51	-0.3
4,946,023	-		PP_4352	0.51	+1.3
4,946,023	-		PP_4352	0.51	-0.7
4,946,023	-		PP_4352	0.51	+0.9
4,946,023	-		PP_4352	0.51	-0.1
4,946,023	-		PP_4352	0.51	+0.8
4,946,589	+				+0.8
4,946,590	-				-0.7
4,946,641	+				+1.0
4,946,642	-				+0.2
4,946,910	+		PP_4353	0.42	+1.2
4,946,911	-		PP_4353	0.42	+1.2
4,946,985	+		PP_4353	0.52	+0.6
4,947,035	+		PP_4353	0.58	+0.7
4,947,147	-		PP_4353	0.73	+1.7
4,947,147	-		PP_4353	0.73	+0.2
4,947,226	+		PP_4353	0.83	+0.4
4,947,226	+		PP_4353	0.83	+0.4
4,947,226	+		PP_4353	0.83	+0.9
4,947,227	-		PP_4353	0.83	+0.6
4,947,227	-		PP_4353	0.83	+0.3
4,947,373	+				+1.1
4,947,373	+				+1.1
4,947,373	+				+1.5
4,947,374	-				+0.2
4,947,374	-				+0.6
4,947,395	+		PP_4354	0.10	+0.1
4,947,410	+		PP_4354	0.16	+1.1
4,947,410	+		PP_4354	0.16	+0.5
4,947,411	-		PP_4354	0.16	+2.1
4,947,774	+		PP_4355	0.15	+0.3
4,947,775	-		PP_4355	0.15	+0.4