Strain Fitness in Pseudomonas putida KT2440 around PP_3800

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,328,328	+		PP_3798	0.20	+0.1
4,328,328	+		PP_3798	0.20	-0.1
4,328,328	+		PP_3798	0.20	+1.6
4,328,329	-		PP_3798	0.20	+0.3
4,328,406	+		PP_3798	0.34	+0.2
4,328,406	+		PP_3798	0.34	-0.5
4,328,467	-		PP_3798	0.46	-1.0
4,328,679	+		PP_3798	0.85	-0.7
4,328,680	-		PP_3798	0.86	-0.2
4,328,680	-		PP_3798	0.86	-0.3
4,328,766	+				-0.5
4,328,766	+				-0.0
4,328,766	+				+1.5
4,328,793	+		PP_3799	0.12	+0.5
4,328,793	+		PP_3799	0.12	+0.2
4,329,005	+		PP_3799	0.79	+0.6
4,329,005	+		PP_3799	0.79	-0.3
4,329,005	+		PP_3799	0.79	+0.6
4,329,006	-		PP_3799	0.79	+1.3
4,329,006	-		PP_3799	0.79	+0.4
4,329,006	-		PP_3799	0.79	-0.7
4,329,050	+				-0.1
4,329,051	-				+0.5
4,329,121	+				+1.0
4,329,121	+				+0.6
4,329,121	+				-0.0
4,329,121	+				-0.1
4,329,153	-		PP_3800	0.15	+0.1
4,329,153	-		PP_3800	0.15	+0.1
4,329,153	-		PP_3800	0.15	+1.3
4,329,262	+		PP_3800	0.34	+0.8
4,329,263	-		PP_3800	0.34	+0.6
4,329,263	-		PP_3800	0.34	+0.1
4,329,263	-		PP_3800	0.34	-0.3
4,329,300	-		PP_3800	0.40	+1.7
4,329,332	+		PP_3800	0.46	-0.1
4,329,333	-		PP_3800	0.46	+0.6
4,329,604	+				-0.6
4,329,719	-				+0.3
4,329,758	+		PP_3801	0.11	+0.3
4,329,759	-		PP_3801	0.11	+1.4
4,329,759	-		PP_3801	0.11	-1.1
4,329,761	+		PP_3801	0.12	-0.6
4,329,762	-		PP_3801	0.12	-0.4
4,329,762	-		PP_3801	0.12	-0.2
4,329,762	-		PP_3801	0.12	-0.1
4,329,767	+		PP_3801	0.12	+0.3
4,329,767	+		PP_3801	0.12	-0.8
4,329,768	-		PP_3801	0.12	-0.8
4,329,768	-		PP_3801	0.12	-0.1
4,329,768	-		PP_3801	0.12	+0.2
4,329,778	+		PP_3801	0.14	+0.1
4,329,778	+		PP_3801	0.14	+0.6
4,329,779	-		PP_3801	0.14	-0.0
4,329,779	-		PP_3801	0.14	+0.6
4,329,840	-		PP_3801	0.20	-0.3
4,330,133	+		PP_3801	0.53	-0.2
4,330,133	+		PP_3801	0.53	+0.0
4,330,251	-		PP_3801	0.66	-0.1
4,330,256	+		PP_3801	0.66	-0.7
4,330,256	+		PP_3801	0.66	-0.5
4,330,257	-		PP_3801	0.67	+0.1
4,330,409	+		PP_3801	0.83	-0.2
4,330,410	-		PP_3801	0.83	+1.0
4,330,462	+		PP_3801	0.89	+0.7
4,330,462	+		PP_3801	0.89	+0.2
4,330,462	+		PP_3801	0.89	-0.9
4,330,463	-		PP_3801	0.89	-0.2
4,330,463	-		PP_3801	0.89	-0.2
4,330,463	-		PP_3801	0.89	+0.1
4,330,478	+				-1.1
4,330,479	-				-0.6
4,330,493	+				-0.4
4,330,493	+				+0.3
4,330,493	+				-0.3
4,330,494	-				-0.1
4,330,494	-				+0.0
4,330,494	-				-0.2