Strain Fitness in Pseudomonas putida KT2440 around PP_3506

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,974,884	-		PP_3504	0.27	-1.4
3,974,905	+		PP_3504	0.34	+0.5
3,974,905	+		PP_3504	0.34	-0.2
3,974,981	+		PP_3504	0.63	+0.0
3,974,981	+		PP_3504	0.63	-0.1
3,974,981	+		PP_3504	0.63	+1.1
3,974,982	-		PP_3504	0.63	+0.1
3,974,982	-		PP_3504	0.63	-0.1
3,974,982	-		PP_3504	0.63	+0.1
3,975,077	+				+0.3
3,975,078	-				+0.2
3,975,078	-				-1.3
3,975,121	+				+0.1
3,975,121	+				-0.8
3,975,121	+				+0.2
3,975,220	+				-0.0
3,975,221	-				-0.4
3,975,221	-				+0.1
3,975,324	-		PP_3505	0.23	-0.2
3,975,403	-		PP_3505	0.37	-0.6
3,975,568	+		PP_3505	0.65	-1.3
3,976,021	+		PP_3506	0.16	+0.3
3,976,078	+		PP_3506	0.22	+0.6
3,976,078	+		PP_3506	0.22	+0.1
3,976,165	-		PP_3506	0.31	+0.7
3,976,440	-		PP_3506	0.58	+0.2
3,976,560	+		PP_3506	0.70	+0.7
3,976,853	+				-0.7
3,976,854	-				+1.0
3,977,038	+				-0.8
3,977,038	+				-1.0
3,977,038	+				-0.1
3,977,039	-				+0.6
3,977,039	-				-1.5
3,977,039	-				-1.2
3,977,143	+				+1.4
3,977,266	+		PP_3507	0.11	+0.1
3,977,266	+				+2.6
3,977,329	+		PP_3507	0.12	+0.4
3,977,329	+				-1.7
3,977,329	+		PP_3507	0.12	+0.5
3,977,330	-		PP_3507	0.12	-2.0
3,977,330	-		PP_3507	0.12	-0.5
3,977,330	-		PP_3507	0.12	+0.2
3,977,330	-		PP_3507	0.12	-0.3
3,977,333	-		PP_3507	0.12	+0.7
3,977,333	-		PP_3507	0.12	+1.9
3,977,452	+		PP_3507	0.15	+0.8
3,977,476	+				-1.4
3,977,477	-		PP_3507	0.16	-0.2