Strain Fitness in Pseudomonas putida KT2440 around PP_3484

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,947,139	+		PP_3483	0.49	-0.3
3,947,139	+		PP_3483	0.49	+0.6
3,947,394	-		PP_3483	0.64	-0.2
3,947,394	-		PP_3483	0.64	+1.3
3,947,443	-		PP_3483	0.66	+0.7
3,947,443	-		PP_3483	0.66	-0.8
3,947,576	+		PP_3483	0.74	-0.7
3,947,596	+		PP_3483	0.75	+0.7
3,947,766	-		PP_3483	0.84	-0.5
3,947,941	+				+0.3
3,947,942	-				+1.8
3,947,942	-				+0.9
3,947,965	+				-0.6
3,947,965	+				+0.5
3,947,965	+				+0.2
3,947,965	+				-0.7
3,947,965	+				-0.3
3,947,965	+				-0.4
3,947,965	+				+0.4
3,947,965	+				+0.5
3,947,966	-				-0.7
3,947,966	-				+0.1
3,947,966	-				-0.7
3,947,966	-				-0.9
3,947,966	-				-0.6
3,948,197	+		PP_3484	0.17	+0.5
3,948,197	+		PP_3484	0.17	-0.9
3,948,198	-		PP_3484	0.17	+0.7
3,948,198	-		PP_3484	0.17	+0.5
3,948,483	-		PP_3484	0.70	+0.7
3,948,496	+		PP_3484	0.73	+1.0
3,948,497	-		PP_3484	0.73	+0.8
3,948,581	+		PP_3484	0.89	-0.2
3,948,581	+		PP_3484	0.89	-0.7
3,948,582	-		PP_3484	0.89	-0.1
3,948,582	-		PP_3484	0.89	+0.9
3,948,622	+				+0.6
3,948,628	+				+0.2
3,948,629	-				+0.1
3,948,629	-				+0.6
3,948,629	-				-0.9
3,948,629	-				-0.9
3,948,658	-				+0.5
3,948,729	-				-0.2
3,948,747	+				-0.1
3,948,843	-				-0.5
3,949,009	+		PP_3485	0.18	+1.0
3,949,124	+				-1.4
3,949,124	+		PP_3485	0.36	+0.1
3,949,125	-		PP_3485	0.36	-1.2
3,949,125	-		PP_3485	0.36	-0.2
3,949,125	-		PP_3485	0.36	-0.3
3,949,157	+		PP_3485	0.41	+1.1
3,949,158	-		PP_3485	0.41	-3.8
3,949,158	-		PP_3485	0.41	+0.2
3,949,210	+		PP_3485	0.50	+2.5
3,949,281	+		PP_3485	0.61	+0.3
3,949,281	+		PP_3485	0.61	+1.1
3,949,356	+		PP_3485	0.72	-0.3
3,949,356	+		PP_3485	0.72	-0.6
3,949,356	+		PP_3485	0.72	-0.0
3,949,356	+		PP_3485	0.72	+0.3
3,949,357	-		PP_3485	0.72	-0.5
3,949,358	+		PP_3485	0.73	+0.2
3,949,410	-		PP_3485	0.81	+0.2
3,949,421	+				+1.6
3,949,422	-		PP_3485	0.83	-1.1
3,949,587	+				-0.5