Strain Fitness in Pseudomonas putida KT2440 around PP_3198

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,626,755	-				-1.6
3,626,775	-				-0.1
3,626,784	+				-0.0
3,626,785	-				+0.2
3,626,785	-				+1.0
3,626,785	-				-1.1
3,626,855	-				-0.5
3,626,925	+		PP_3197	0.15	-0.0
3,627,163	-		PP_3197	0.41	-0.0
3,627,163	-		PP_3197	0.41	-0.0
3,627,259	+		PP_3197	0.51	+1.0
3,627,259	+		PP_3197	0.51	+0.3
3,627,441	+		PP_3197	0.70	-0.6
3,627,839	+		PP_3198	0.31	+1.2
3,627,934	+		PP_3198	0.59	+0.8
3,627,934	+				+1.4
3,627,935	-		PP_3198	0.60	+0.1
3,628,043	+				+0.3
3,628,044	-				+0.5
3,628,146	+				+0.5
3,628,216	+				-1.2
3,628,216	+				-0.3
3,628,217	-				+0.5
3,628,335	-		PP_3199	0.11	-1.2
3,628,403	+		PP_3199	0.17	+1.0
3,628,442	+		PP_3199	0.21	-1.3
3,628,442	+		PP_3199	0.21	-0.4
3,628,443	-		PP_3199	0.21	-0.0
3,628,443	-		PP_3199	0.21	-2.4
3,628,443	-		PP_3199	0.21	-0.6
3,628,665	-		PP_3199	0.40	+0.3
3,628,808	+		PP_3199	0.53	+0.5
3,628,809	-		PP_3199	0.53	+0.5
3,628,809	-		PP_3199	0.53	+1.0
3,628,862	+		PP_3199	0.58	+0.9
3,628,862	+		PP_3199	0.58	-0.7