Strain Fitness in Pseudomonas putida KT2440 around PP_2889

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
3,285,522	+		PP_2887	0.67	+0.4
3,285,523	-		PP_2887	0.68	-0.7
3,285,523	-		PP_2887	0.68	-1.8
3,285,523	-		PP_2887	0.68	-0.1
3,285,645	-		PP_2887	0.79	+0.5
3,285,889	+				-0.0
3,285,956	+				+0.0
3,285,985	-				-0.7
3,286,096	+		PP_2888	0.20	+0.8
3,287,048	+		PP_2889	0.72	+1.2
3,287,049	-		PP_2889	0.72	+0.6
3,287,054	+		PP_2889	0.73	+0.7
3,287,165	-		PP_2889	0.87	-1.0
3,287,182	+		PP_2889	0.90	+1.2
3,287,182	+		PP_2889	0.90	+0.6
3,287,183	-		PP_2889	0.90	+0.7
3,287,183	-		PP_2889	0.90	+0.2
3,287,184	+				+0.6
3,287,257	+				+0.2
3,287,257	+				+0.3
3,287,257	+				-1.0
3,287,257	+				+0.7
3,287,257	+				+0.2
3,287,258	-				-1.0
3,287,298	-				-0.5
3,287,361	+				+1.2
3,287,361	+				-1.0
3,287,503	-		PP_2890	0.25	+0.1
3,287,523	-		PP_2890	0.27	+0.6
3,287,523	-		PP_2890	0.27	-1.2
3,287,523	-		PP_2890	0.27	-0.4
3,287,784	+		PP_2890	0.60	-0.2
3,287,831	-		PP_2890	0.65	+0.2
3,287,946	+		PP_2890	0.79	+0.5
3,287,946	+		PP_2890	0.79	-0.8
3,287,947	-		PP_2890	0.80	-0.3
3,287,947	-		PP_2890	0.80	-0.7
3,287,958	+		PP_2890	0.81	+0.2
3,288,195	+				+0.2