Strain Fitness in Pseudomonas putida KT2440 around PP_2602

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,974,105	+				-0.4
2,974,106	-				+0.4
2,974,106	-				-0.5
2,974,141	+				+0.0
2,974,141	+				-1.2
2,974,218	+		PP_2601	0.19	+0.1
2,974,218	+		PP_2601	0.19	+0.4
2,974,218	+		PP_2601	0.19	-1.2
2,974,219	-		PP_2601	0.19	+0.3
2,974,248	+		PP_2601	0.23	-1.6
2,974,270	+		PP_2601	0.26	+0.5
2,974,288	-		PP_2601	0.28	-0.1
2,974,470	+		PP_2601	0.52	+1.1
2,974,470	+		PP_2601	0.52	-0.7
2,974,470	+		PP_2601	0.52	+0.7
2,974,471	-		PP_2601	0.52	+0.3
2,974,471	-		PP_2601	0.52	+0.6
2,974,471	-		PP_2601	0.52	+0.0
2,974,544	+		PP_2601	0.61	-0.0
2,974,605	+		PP_2601	0.69	-0.8
2,974,605	+		PP_2601	0.69	-0.3
2,974,783	+				-1.3
2,975,001	-				+0.1
2,975,001	-				-0.2
2,975,329	+		PP_2602	0.33	+0.8
2,975,341	+		PP_2602	0.34	+0.0
2,975,342	-		PP_2602	0.34	+1.1
2,975,460	+		PP_2602	0.45	+0.3
2,975,460	+		PP_2602	0.45	-0.6
2,975,461	-		PP_2602	0.45	+0.4
2,975,461	-		PP_2602	0.45	+1.1
2,975,541	+		PP_2602	0.53	+0.1
2,975,752	-		PP_2602	0.73	+1.0
2,975,835	-		PP_2602	0.81	+0.9
2,975,983	+				+0.4
2,976,036	+				+0.2
2,976,037	-				+0.8
2,976,037	-				-0.3
2,976,044	+				-0.0
2,976,044	+				-0.0
2,976,045	-				-0.5
2,976,045	-				-0.0
2,976,045	-				+0.3
2,976,047	+				+0.3
2,976,047	+				-0.4
2,976,048	-				-0.3
2,976,048	-				+0.6
2,976,062	+				-1.2
2,976,062	+				+1.1
2,976,063	-				+0.8
2,976,153	-		PP_2603	0.11	+0.3
2,976,376	-		PP_2603	0.38	+0.5
2,976,447	-		PP_2603	0.47	-0.2
2,976,489	+		PP_2603	0.52	+0.4
2,976,490	-		PP_2603	0.52	+0.1
2,976,490	-		PP_2603	0.52	-0.1
2,976,490	-		PP_2603	0.52	-0.1
2,976,629	+		PP_2603	0.69	-0.9
2,976,629	+		PP_2603	0.69	-0.7
2,976,748	-		PP_2603	0.84	+0.3
2,977,013	+				-1.1
2,977,013	+				+1.2
2,977,014	-				+0.0