Strain Fitness in Pseudomonas putida KT2440 around PP_2423

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,769,458	+		PP_2421	0.59	-0.2
2,769,459	-		PP_2421	0.59	+0.2
2,769,512	+		PP_2421	0.69	+0.1
2,769,512	+		PP_2421	0.69	+1.1
2,769,513	-		PP_2421	0.69	+0.8
2,769,513	-		PP_2421	0.69	+0.3
2,769,513	-		PP_2421	0.69	+0.9
2,769,618	-		PP_2421	0.88	-0.8
2,769,824	+		PP_2422	0.12	-2.1
2,770,034	+		PP_2422	0.71	-0.7
2,770,035	-		PP_2422	0.72	+0.6
2,770,035	-		PP_2422	0.72	-2.4
2,770,087	+		PP_2422	0.86	+0.1
2,770,088	-		PP_2422	0.87	-0.3
2,770,088	-		PP_2422	0.87	-0.9
2,770,088	-				-0.1
2,770,095	+		PP_2422	0.89	-0.5
2,770,096	-		PP_2422	0.89	+0.5
2,770,250	+				-1.9
2,770,251	-				-0.0
2,770,298	+				-0.5
2,770,299	-				+0.1
2,770,299	-				-0.1
2,770,301	+				-0.7
2,770,301	+				-0.2
2,770,353	-		PP_2423	0.12	+0.2
2,770,470	-		PP_2423	0.25	-2.4
2,770,535	+		PP_2423	0.32	-1.3
2,770,535	+		PP_2423	0.32	-1.4
2,770,536	-		PP_2423	0.33	+0.3
2,770,536	-		PP_2423	0.33	-0.6
2,770,544	+		PP_2423	0.33	-0.7
2,770,611	-		PP_2423	0.41	-0.6
2,770,611	-		PP_2423	0.41	+0.5
2,770,650	-		PP_2423	0.45	+0.4
2,770,667	+		PP_2423	0.47	-1.6
2,770,668	-		PP_2423	0.47	+0.4
2,770,814	+		PP_2423	0.63	-1.4
2,770,814	+		PP_2423	0.63	-1.9
2,770,815	-		PP_2423	0.64	-1.5
2,770,865	+		PP_2423	0.69	-0.1
2,770,865	+		PP_2423	0.69	+0.0
2,770,865	+		PP_2423	0.69	-1.5
2,770,865	+		PP_2423	0.69	-0.0
2,770,866	-		PP_2423	0.69	+0.3
2,770,891	+		PP_2423	0.72	-0.1
2,770,980	-		PP_2423	0.82	-0.7
2,770,980	-		PP_2423	0.82	-0.3
2,771,009	+		PP_2423	0.85	+0.1
2,771,009	+		PP_2423	0.85	-0.1
2,771,009	+		PP_2423	0.85	-1.0
2,771,099	+				-0.4
2,771,100	-				+0.4
2,771,100	-				+0.0
2,771,100	-				+0.6
2,771,121	+				-0.3
2,771,121	+				+0.4
2,771,122	-				-1.5
2,771,122	-				-0.5
2,771,125	+				+0.1
2,771,125	+				-1.5
2,771,125	+				-0.0
2,771,126	-				+0.1
2,771,150	+				+0.3
2,771,150	+				-0.3
2,771,150	+				-0.4
2,771,150	+				-0.3
2,771,150	+				-0.2
2,771,150	+				+0.2
2,771,151	-				+0.5
2,771,203	-				-0.7
2,771,223	+				-0.5
2,771,223	+				+0.5
2,771,223	+				-0.8
2,771,223	+				-0.1
2,771,224	-				+0.4
2,771,224	-				+0.0
2,771,224	-				+0.7
2,771,230	-				+0.9
2,771,255	+				+1.0
2,771,255	+				+0.1
2,771,256	-				+0.5
2,771,256	-				+0.3
2,771,256	-				+0.5
2,771,256	-				-1.8
2,771,256	-				+0.2
2,771,256	-				-0.6
2,771,258	+				+0.6
2,771,258	+				-1.1
2,771,258	+				-0.2
2,771,258	+				+1.3
2,771,300	+				-0.3
2,771,300	+				+0.0
2,771,300	+				+0.6
2,771,300	+				-0.3
2,771,312	+				+0.4
2,771,312	+				+0.7
2,771,314	+				-0.8
2,771,314	+				+0.4
2,771,314	+				+0.3
2,771,315	-				-0.6
2,771,315	-				-0.7
2,771,315	-				+0.4
2,771,315	-				-0.8
2,771,315	-				+0.8
2,771,315	-				-1.0
2,771,315	-				-0.1
2,771,315	-				+0.3
2,771,476	+		PP_2424	0.32	+1.0
2,771,476	+		PP_2424	0.32	-0.2
2,771,476	+		PP_2424	0.32	-1.2
2,771,476	+		PP_2424	0.32	+0.0
2,771,476	+		PP_2424	0.32	-0.6
2,771,476	+		PP_2424	0.32	-1.3
2,771,477	-		PP_2424	0.32	-0.1
2,771,477	-		PP_2424	0.32	-0.8
2,771,477	-		PP_2424	0.32	-1.4
2,771,477	-		PP_2424	0.32	-0.0
2,771,637	+		PP_2424	0.62	-1.8
2,771,638	-		PP_2424	0.62	-0.1
2,771,763	+		PP_2424	0.85	-0.9
2,771,790	+		PP_2424	0.90	+1.6
2,771,881	+				-0.1
2,771,881	+				+0.2
2,771,882	-				+0.1
2,771,882	-				-1.1
2,771,912	-				+0.2
2,771,912	-				-1.2
2,771,929	+				+0.6
2,771,930	-				+0.1
2,771,938	+				+0.3
2,771,972	-				+0.7
2,772,001	+		PP_2425	0.10	+0.8