Strain Fitness in Pseudomonas putida KT2440 around PP_2387

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,724,609	+				+0.9
2,724,740	+				-0.6
2,724,790	+				+0.1
2,724,790	+				-0.6
2,724,791	-				+0.8
2,724,791	-				-0.7
2,724,849	-		PP_2386	0.13	+0.2
2,724,863	+		PP_2386	0.15	+0.1
2,724,945	-		PP_2386	0.25	+1.7
2,724,947	+		PP_2386	0.25	-0.5
2,724,948	-		PP_2386	0.25	+0.3
2,724,948	-		PP_2386	0.25	+1.4
2,724,956	+		PP_2386	0.26	+0.2
2,724,956	+		PP_2386	0.26	+0.6
2,724,993	+		PP_2386	0.31	-0.7
2,724,993	+		PP_2386	0.31	-0.3
2,724,993	+		PP_2386	0.31	-0.0
2,724,993	+		PP_2386	0.31	-0.5
2,724,993	+		PP_2386	0.31	+1.3
2,724,994	-		PP_2386	0.31	-0.5
2,724,994	-		PP_2386	0.31	-0.3
2,724,994	-		PP_2386	0.31	+0.2
2,724,999	-		PP_2386	0.31	-0.2
2,725,124	+		PP_2386	0.46	-0.3
2,725,124	+		PP_2386	0.46	-0.7
2,725,125	-		PP_2386	0.46	+0.0
2,725,133	+				-2.1
2,725,133	+		PP_2386	0.47	-0.5
2,725,134	-		PP_2386	0.48	-0.2
2,725,134	-		PP_2386	0.48	-0.1
2,725,134	-		PP_2386	0.48	-1.2
2,725,134	-		PP_2386	0.48	-1.0
2,725,134	-		PP_2386	0.48	-0.9
2,725,136	+		PP_2386	0.48	+0.1
2,725,334	+		PP_2386	0.72	-0.1
2,725,364	-		PP_2386	0.75	+0.1
2,725,459	+		PP_2386	0.87	-0.9
2,725,460	-		PP_2386	0.87	-0.9
2,725,460	-		PP_2386	0.87	+0.6
2,725,516	-				-1.6
2,725,526	+				-0.1
2,725,526	+				-0.8
2,725,527	-				-0.4
2,725,527	-				-0.3
2,725,527	-				+0.0
2,725,527	-				-0.5
2,725,531	+				+0.3
2,726,140	-		PP_2387	0.52	+0.2
2,726,163	-		PP_2387	0.54	+1.9
2,726,163	-		PP_2387	0.54	-0.5
2,726,565	+				+0.2
2,726,567	+				+0.5
2,726,567	+				+0.3
2,726,606	+				+1.1
2,726,606	+				+0.3
2,726,721	-				-0.2
2,726,822	+		PP_2388	0.20	+0.0
2,726,822	+		PP_2388	0.20	-0.1
2,726,822	+		PP_2388	0.20	+0.3
2,726,823	-		PP_2388	0.20	-0.5
2,726,823	-		PP_2388	0.20	-1.8
2,727,069	-		PP_2388	0.60	-1.9
2,727,277	+				+0.1
2,727,277	+				+0.8
2,727,278	-				-0.7
2,727,297	-				-1.6
2,727,297	-				-0.4
2,727,316	-				+0.5
2,727,337	+				-0.3
2,727,339	+				+1.0
2,727,340	-				-0.8
2,727,436	+		PP_2389	0.14	+0.4
2,727,437	-				+1.1
2,727,490	+		PP_2389	0.21	-0.3