Strain Fitness in Pseudomonas putida KT2440 around PP_2280

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,601,102	-		PP_2279	0.37	-1.1
2,601,144	+		PP_2279	0.39	-0.3
2,601,144	+		PP_2279	0.39	-1.0
2,601,144	+		PP_2279	0.39	-0.2
2,601,145	-		PP_2279	0.39	-0.4
2,601,202	+		PP_2279	0.43	-0.3
2,601,202	+				-0.2
2,601,202	+		PP_2279	0.43	-0.7
2,601,202	+		PP_2279	0.43	+0.2
2,601,308	-		PP_2279	0.50	+1.9
2,601,308	-		PP_2279	0.50	-0.6
2,601,319	+		PP_2279	0.50	-0.4
2,601,331	+		PP_2279	0.51	+0.1
2,601,332	-		PP_2279	0.51	-0.4
2,601,332	-		PP_2279	0.51	-1.2
2,601,435	+		PP_2279	0.58	-0.6
2,601,644	-		PP_2279	0.71	-0.5
2,601,682	+				+0.0
2,601,682	+		PP_2279	0.74	+1.4
2,601,682	+		PP_2279	0.74	+0.8
2,601,683	-		PP_2279	0.74	-0.3
2,601,783	+		PP_2279	0.80	-0.3
2,601,783	+		PP_2279	0.80	-1.5
2,601,784	-		PP_2279	0.80	-0.9
2,601,907	+		PP_2279	0.88	+0.7
2,601,907	+		PP_2279	0.88	+0.2
2,601,908	-		PP_2279	0.88	+0.7
2,601,908	-		PP_2279	0.88	+0.5
2,601,908	-		PP_2279	0.88	-1.0
2,602,120	-		PP_2280	0.27	+0.6
2,602,120	-		PP_2280	0.27	+0.6
2,602,139	+		PP_2280	0.39	+1.1
2,602,139	+		PP_2280	0.39	+1.3
2,602,235	+				+2.1
2,602,367	+		PP_2281	0.17	-0.5
2,602,426	+		PP_2281	0.24	+0.9
2,602,489	-		PP_2281	0.32	+0.8
2,602,643	-		PP_2281	0.52	-1.0
2,602,643	-		PP_2281	0.52	-0.2
2,602,689	-		PP_2281	0.58	+0.4
2,602,840	+		PP_2281	0.77	-1.4
2,602,841	-		PP_2281	0.77	+0.2
2,602,944	+				-0.4
2,603,161	+		PP_5513	0.27	-0.2
2,603,204	+		PP_5513	0.36	+0.8
2,603,204	+		PP_5513	0.36	+1.1
2,603,205	-		PP_5513	0.37	+0.9