Strain Fitness in Pseudomonas putida KT2440 around PP_2234

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
2,540,593	+		PP_2232	0.63	-0.7
2,540,593	+		PP_2232	0.63	-1.5
2,540,594	-		PP_2232	0.64	+0.4
2,540,636	-		PP_2232	0.72	+0.2
2,540,636	-		PP_2232	0.72	-0.6
2,540,718	+		PP_2232	0.87	+0.6
2,540,719	-		PP_2232	0.87	-3.2
2,540,729	-		PP_2232	0.89	-1.5
2,540,735	-				+1.7
2,540,739	+				-0.7
2,540,877	-				-1.2
2,541,341	+				-0.7
2,541,403	-				+1.5
2,541,403	-				-1.9
2,541,403	-				-0.6
2,541,419	+				+0.1
2,541,420	-				+0.1
2,541,420	-				+0.1
2,541,420	-				+0.1
2,541,420	-				+0.2
2,541,420	-				-0.6
2,541,423	+				+0.9
2,541,423	+				+0.8
2,541,424	-				-0.1
2,541,424	-				+0.1
2,541,424	-				-0.2
2,541,425	+				+0.5
2,541,425	+				-0.6
2,541,425	+				-1.2
2,541,426	-				-0.5
2,541,426	-				-1.2
2,541,426	-				+0.5
2,541,426	-				-0.2
2,541,426	-				+0.3
2,541,426	-				+0.8
2,541,466	+				-0.1
2,541,466	+				-0.2
2,541,467	-				+0.5
2,541,467	-				+0.8
2,541,518	+				+0.0
2,541,519	-				+0.5
2,541,691	-		PP_2234	0.23	-1.0
2,541,796	+		PP_2234	0.33	-1.2
2,541,796	+		PP_2234	0.33	-0.0
2,541,796	+		PP_2234	0.33	-1.1
2,541,797	-		PP_2234	0.33	+3.6
2,541,884	+		PP_2234	0.42	-1.9
2,541,884	+		PP_2234	0.42	-2.1
2,541,884	+		PP_2234	0.42	-0.5
2,541,884	+		PP_2234	0.42	-0.3
2,541,925	-		PP_2234	0.46	+0.8
2,542,055	+		PP_2234	0.59	-0.7
2,542,055	+		PP_2234	0.59	-0.2
2,542,271	+		PP_2234	0.81	-0.1
2,542,271	+		PP_2234	0.81	-1.1
2,542,409	-				+0.9
2,542,409	-				+1.7
2,542,458	-				-0.6
2,542,520	+				-1.9
2,542,521	-				-0.4
2,542,521	-				+0.7
2,542,521	-				+0.8
2,542,521	-				+0.1
2,542,524	+				+0.4
2,542,525	-				-0.1
2,542,525	-				+0.3
2,542,525	-				-3.3
2,542,593	+		PP_2235	0.14	-0.5
2,542,593	+		PP_2235	0.14	-0.0
2,542,594	-		PP_2235	0.14	+0.6
2,542,594	-		PP_2235	0.14	-0.9
2,542,600	+		PP_2235	0.15	+0.6
2,542,600	+		PP_2235	0.15	+0.1
2,542,600	+		PP_2235	0.15	+1.7
2,542,600	+		PP_2235	0.15	-0.1
2,542,600	+		PP_2235	0.15	+0.4
2,542,601	-		PP_2235	0.16	-2.2
2,542,601	-		PP_2235	0.16	+1.2
2,542,604	+		PP_2235	0.17	+0.4
2,542,604	+		PP_2235	0.17	+0.7
2,542,605	-		PP_2235	0.17	+0.3
2,542,605	-		PP_2235	0.17	-0.1
2,542,722	-		PP_2235	0.48	+0.7
2,542,907	+				-0.3
2,542,908	-				+0.1
2,542,919	+				-0.2
2,542,920	-				+0.2
2,542,986	+		PP_2236	0.11	+1.1
2,542,986	+		PP_2236	0.11	-1.2
2,542,986	+		PP_2236	0.11	+0.3
2,542,986	+		PP_2236	0.11	-0.7
2,542,987	-		PP_2236	0.11	+0.2
2,542,988	+		PP_2236	0.11	+0.4
2,542,989	-		PP_2236	0.12	+1.1
2,543,082	-		PP_2236	0.24	-0.3
2,543,082	-		PP_2236	0.24	+0.6
2,543,094	+		PP_2236	0.25	-0.1
2,543,095	-		PP_2236	0.25	+1.8
2,543,108	+		PP_2236	0.27	-0.2
2,543,108	+		PP_2236	0.27	-0.3
2,543,108	+		PP_2236	0.27	+1.1
2,543,108	+		PP_2236	0.27	+0.8
2,543,108	+		PP_2236	0.27	-0.6
2,543,108	+		PP_2236	0.27	+0.4
2,543,108	+		PP_2236	0.27	+0.3
2,543,109	-		PP_2236	0.27	-0.0
2,543,109	-		PP_2236	0.27	+0.6
2,543,137	+		PP_2236	0.31	+0.0
2,543,137	+		PP_2236	0.31	+0.5
2,543,137	+		PP_2236	0.31	-0.1
2,543,137	+		PP_2236	0.31	-0.7
2,543,137	+		PP_2236	0.31	+0.3
2,543,137	+				-1.7
2,543,137	+		PP_2236	0.31	-0.2
2,543,137	+		PP_2236	0.31	+0.6
2,543,137	+		PP_2236	0.31	+0.1
2,543,137	+		PP_2236	0.31	+0.7
2,543,138	-		PP_2236	0.31	-0.8
2,543,138	-		PP_2236	0.31	-0.6
2,543,138	-		PP_2236	0.31	+0.8
2,543,138	-		PP_2236	0.31	-0.2
2,543,138	-		PP_2236	0.31	-0.1
2,543,138	-		PP_2236	0.31	+0.2
2,543,138	-		PP_2236	0.31	+0.6
2,543,138	-		PP_2236	0.31	+0.4
2,543,138	-		PP_2236	0.31	+0.4
2,543,138	-		PP_2236	0.31	-1.0
2,543,138	-		PP_2236	0.31	+1.1
2,543,138	-		PP_2236	0.31	+0.8
2,543,267	+		PP_2236	0.48	+0.1
2,543,267	+		PP_2236	0.48	-1.7
2,543,267	+		PP_2236	0.48	+0.1
2,543,268	-		PP_2236	0.48	+0.1
2,543,268	-		PP_2236	0.48	-0.2
2,543,342	+		PP_2236	0.57	+0.4
2,543,342	+		PP_2236	0.57	+1.3
2,543,342	+		PP_2236	0.57	-0.3
2,543,405	+		PP_2236	0.65	-0.1
2,543,405	+		PP_2236	0.65	+0.2
2,543,405	+		PP_2236	0.65	+0.4
2,543,406	-		PP_2236	0.66	-0.3