Strain Fitness in Pseudomonas putida KT2440 around PP_1068

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,222,341	+		PP_1067	0.54	+0.5
1,222,341	+		PP_1067	0.54	-0.0
1,222,342	-		PP_1067	0.55	+0.5
1,222,415	+		PP_1067	0.58	+0.1
1,222,416	-		PP_1067	0.58	-0.6
1,222,461	+		PP_1067	0.61	+0.2
1,222,461	+		PP_1067	0.61	-0.2
1,222,462	-		PP_1067	0.61	-1.1
1,222,464	+		PP_1067	0.61	+1.0
1,222,464	+		PP_1067	0.61	+1.9
1,222,464	+		PP_1067	0.61	-0.0
1,222,465	-		PP_1067	0.61	-0.1
1,222,465	-		PP_1067	0.61	+0.4
1,222,686	+		PP_1067	0.73	+0.7
1,222,687	-		PP_1067	0.73	-0.3
1,222,689	+		PP_1067	0.73	+0.9
1,222,690	-		PP_1067	0.73	+0.5
1,222,708	+		PP_1067	0.74	+1.2
1,222,722	+		PP_1067	0.74	+0.1
1,222,723	-		PP_1067	0.74	+0.3
1,222,827	-		PP_1067	0.80	+0.2
1,222,981	-		PP_1067	0.88	+0.3
1,222,981	-		PP_1067	0.88	-0.3
1,222,986	+		PP_1067	0.88	+0.5
1,222,987	-		PP_1067	0.88	+0.5
1,222,987	-		PP_1067	0.88	+0.2
1,222,987	-		PP_1067	0.88	-0.1
1,222,987	-		PP_1067	0.88	+0.1
1,222,987	-		PP_1067	0.88	-0.0
1,223,085	+				-0.7
1,223,085	+				-2.4
1,223,133	-				-0.3
1,223,221	+				+0.4
1,223,222	-				-0.3
1,223,435	-		PP_1068	0.21	+0.4
1,223,520	+		PP_1068	0.32	-0.5
1,223,521	-		PP_1068	0.32	+0.9
1,223,521	-		PP_1068	0.32	+0.8
1,223,639	-		PP_1068	0.47	+0.4
1,224,070	+				-0.1
1,224,166	+		PP_1069	0.24	+0.2
1,224,166	+		PP_1069	0.24	+0.3
1,224,167	-		PP_1069	0.24	+0.1
1,224,167	-		PP_1069	0.24	-1.1
1,224,168	+		PP_1069	0.24	-0.2
1,224,271	+		PP_1069	0.39	-0.1
1,224,272	-		PP_1069	0.40	+1.2
1,224,410	+		PP_1069	0.60	+0.2
1,224,454	+		PP_1069	0.67	+0.9
1,224,454	+		PP_1069	0.67	+0.2
1,224,455	-				+1.2
1,224,497	-		PP_1069	0.73	+0.2
1,224,497	-		PP_1069	0.73	+0.2
1,224,680	-				-0.4
1,224,769	+		PP_1070	0.12	+0.4
1,224,770	-		PP_1070	0.12	+0.2
1,224,770	-		PP_1070	0.12	-0.4
1,224,770	-		PP_1070	0.12	+0.8
1,224,770	-		PP_1070	0.12	+0.4
1,224,958	+		PP_1070	0.37	-0.3
1,224,958	+		PP_1070	0.37	-2.1
1,224,959	-		PP_1070	0.38	-0.1
1,224,959	-		PP_1070	0.38	+0.7
1,224,959	-		PP_1070	0.38	+0.4