Strain Fitness in Pseudomonas putida KT2440 around PP_1004

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,143,281	-		PP_1003	0.29	-0.2
1,143,905	+		PP_1003	0.73	-0.9
1,143,906	-		PP_1003	0.73	-2.2
1,143,923	+		PP_1003	0.74	-0.2
1,143,927	+		PP_1003	0.74	-0.5
1,143,927	+		PP_1003	0.74	-3.4
1,143,927	+		PP_1003	0.74	-0.8
1,143,927	+		PP_1003	0.74	+1.2
1,143,928	-		PP_1003	0.74	-0.0
1,143,928	-		PP_1003	0.74	+0.3
1,143,972	+		PP_1003	0.78	+0.3
1,143,973	-		PP_1003	0.78	+0.0
1,143,973	-		PP_1003	0.78	+0.2
1,143,991	-		PP_1003	0.79	-0.3
1,144,084	-		PP_1003	0.85	+0.5
1,144,101	+		PP_1003	0.87	-0.2
1,144,101	+		PP_1003	0.87	-0.3
1,144,102	-		PP_1003	0.87	-0.1
1,144,143	+		PP_1003	0.89	-0.1
1,144,144	-		PP_1003	0.90	-0.3
1,144,260	+				-0.1
1,144,261	-				+1.0
1,144,269	+				-0.5
1,144,478	+		PP_1004	0.50	+1.1
1,144,479	-		PP_1004	0.50	+0.7
1,144,630	+		PP_1004	0.86	-0.6
1,144,631	-		PP_1004	0.87	+0.8
1,144,631	-		PP_1004	0.87	+1.3
1,144,677	+				+0.8
1,144,698	+				-0.1
1,144,698	+				+0.7
1,144,698	+				-0.4
1,144,699	-				-0.6
1,144,699	-				-0.8
1,144,699	-				+0.3
1,144,765	+				-1.1
1,145,190	+		PP_1005	0.76	-0.3
1,145,190	+		PP_1005	0.76	+0.5
1,145,191	-		PP_1005	0.76	-1.9
1,145,191	-		PP_1005	0.76	+0.2
1,145,191	-		PP_1005	0.76	-0.2
1,145,191	-		PP_1005	0.76	-0.9
1,145,191	-		PP_1005	0.76	-0.8
1,145,194	+		PP_1005	0.76	+0.0
1,145,195	-		PP_1005	0.77	-1.1
1,145,195	-		PP_1005	0.77	+0.1
1,145,361	-				-0.1
1,145,364	+				+1.0
1,145,365	-				+0.1
1,145,365	-				+2.1
1,145,365	-				-0.3
1,145,407	-				+0.9
1,145,407	-				-2.1
1,145,467	+				-0.1
1,145,498	-				-1.2
1,145,498	-				+0.6
1,145,575	-				+0.1
1,145,602	-				+0.7
1,145,602	-				-0.5
1,145,622	+				-0.1
1,145,623	-				-0.6
1,145,623	-				-1.0
1,145,623	-				+0.9
1,145,623	-				-0.2
1,145,623	-				+0.0
1,145,661	+				-1.0
1,145,661	+				-0.0
1,145,661	+				-0.9
1,145,661	+				+0.5
1,145,661	+				-0.8
1,145,662	-				-0.3
1,145,662	-				-0.9
1,145,662	-				-0.3
1,145,662	-				-0.1