Strain Fitness in Pseudomonas putida KT2440 around PP_0919

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
1,061,047	+		PP_0918	0.25	-0.1
1,061,048	-		PP_0918	0.25	-0.1
1,061,105	+		PP_0918	0.31	+0.1
1,061,140	+		PP_0918	0.35	+0.7
1,061,141	-		PP_0918	0.35	+0.9
1,061,141	-		PP_0918	0.35	+0.3
1,061,207	-		PP_0918	0.41	+1.1
1,061,221	+		PP_0918	0.43	+0.1
1,061,221	+		PP_0918	0.43	-0.3
1,061,221	+		PP_0918	0.43	+1.3
1,061,222	-		PP_0918	0.43	-1.3
1,061,222	-		PP_0918	0.43	+0.1
1,061,317	-		PP_0918	0.53	+0.6
1,061,412	+		PP_0918	0.62	-0.2
1,061,426	+		PP_0918	0.64	-0.1
1,061,467	+		PP_0918	0.68	-0.3
1,061,467	+		PP_0918	0.68	-0.0
1,061,467	+		PP_0918	0.68	+0.3
1,061,474	+		PP_0918	0.68	+0.4
1,061,474	+		PP_0918	0.68	-0.2
1,061,474	+		PP_0918	0.68	+0.7
1,061,474	+		PP_0918	0.68	-0.1
1,061,474	+		PP_0918	0.68	-0.4
1,061,474	+		PP_0918	0.68	+0.3
1,061,474	+		PP_0918	0.68	-1.1
1,061,474	+		PP_0918	0.68	+0.9
1,061,475	-		PP_0918	0.68	-1.5
1,061,475	-		PP_0918	0.68	+0.2
1,061,475	-		PP_0918	0.68	+0.4
1,061,475	-		PP_0918	0.68	+0.4
1,061,475	-		PP_0918	0.68	+1.1
1,061,515	+		PP_0918	0.73	-0.2
1,061,515	+		PP_0918	0.73	-0.4
1,061,515	+		PP_0918	0.73	+0.8
1,061,515	+		PP_0918	0.73	+0.2
1,061,516	-		PP_0918	0.73	-0.7
1,061,563	+		PP_0918	0.77	-0.1
1,061,563	+		PP_0918	0.77	-0.5
1,061,563	+		PP_0918	0.77	-1.5
1,061,563	+		PP_0918	0.77	+0.6
1,061,564	-		PP_0918	0.77	+0.9
1,061,564	-		PP_0918	0.77	+0.7
1,061,564	-				+1.0
1,061,578	-		PP_0918	0.79	+0.5
1,061,613	-		PP_0918	0.82	-0.5
1,061,713	+				+1.3
1,061,714	-				+0.1
1,061,819	+				+2.5
1,061,820	-				-0.0
1,061,821	+				-0.3
1,061,821	+				-1.5
1,061,822	-				-0.4
1,061,822	-				-0.1
1,061,842	-				+0.1
1,061,856	+				+1.3
1,061,856	+				-0.6
1,061,857	-				+0.2
1,061,857	-				+0.2
1,061,866	+				-0.8
1,062,184	+				-0.3
1,062,207	+		PP_0919	0.40	+0.8
1,062,207	+		PP_0919	0.40	-0.1
1,062,208	-		PP_0919	0.40	+0.9
1,062,208	-		PP_0919	0.40	-0.5
1,062,208	-		PP_0919	0.40	+1.1
1,062,310	+		PP_0919	0.52	+0.5
1,062,667	+				-0.0
1,062,728	+				+1.2
1,062,728	+				-0.0
1,062,799	+				+0.5
1,062,799	+				-0.6
1,062,799	+				+0.8
1,062,800	-				-0.2
1,062,800	-				-0.7
1,062,861	+				+0.8
1,062,882	+				-0.6
1,062,883	-				-0.1
1,063,044	+		PP_0920	0.20	+0.0
1,063,044	+		PP_0920	0.20	+1.9
1,063,045	-		PP_0920	0.20	+0.3
1,063,045	-		PP_0920	0.20	+0.8
1,063,152	+		PP_0920	0.30	+0.3
1,063,152	+		PP_0920	0.30	+0.4
1,063,152	+		PP_0920	0.30	-0.4
1,063,152	+		PP_0920	0.30	+0.8
1,063,153	-		PP_0920	0.30	-0.2
1,063,153	-				-0.7
1,063,153	-		PP_0920	0.30	-1.0
1,063,153	-		PP_0920	0.30	-0.2
1,063,153	-		PP_0920	0.30	-0.0
1,063,153	-		PP_0920	0.30	-0.6
1,063,153	-		PP_0920	0.30	-0.6
1,063,153	-		PP_0920	0.30	-0.7
1,063,223	+		PP_0920	0.37	+0.6
1,063,223	+		PP_0920	0.37	-0.1
1,063,425	+		PP_0920	0.56	+0.2
1,063,479	+		PP_0920	0.61	+0.4
1,063,480	-		PP_0920	0.61	-0.1
1,063,561	-		PP_0920	0.69	+0.4
1,063,576	+		PP_0920	0.70	+0.4
1,063,576	+		PP_0920	0.70	+0.1
1,063,577	-		PP_0920	0.70	-0.5
1,063,577	-		PP_0920	0.70	+1.2
1,063,655	+		PP_0920	0.78	-0.4
1,063,655	+		PP_0920	0.78	+0.3
1,063,655	+		PP_0920	0.78	-0.1
1,063,685	-		PP_0920	0.81	-1.1